Browse Element(s) Details


Os.54303.1.S1_at

Description gb:AK103203.1
DB_XREF= gi:32988412
TID=Os.54303.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033122C24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033122C24, full insert sequence.
FL= gb:AK103203.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4330011/11BRCA1 C Terminus domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43250NANA4+25366954..25371558retrotransposon protein, putative, unclassified
LOC_Os04g43260NANA4+25372148..25375134hypothetical protein
LOC_Os04g43270OsAffx.4072.1.S1_at11/114+25380376..25383164CER1, putative
LOC_Os04g43280OsAffx.14255.1.S1_at10/114+25385580..25387053possible aldehyde decarbonylase, putative
LOC_Os04g43290Os.47938.1.S1_at11/114+25389146..25391994actin-related protein 2/3 complex 34kDa subunit family, putative, expressed
LOC_Os04g43300Os.54303.1.S1_at11/114+25392578..25396729BRCA1 C Terminus domain containing protein, expressed
LOC_Os04g43310Os.55299.1.S1_at10/114+25399526..25400243expressed protein
LOC_Os04g43324OsAffx.26442.2.S1_x_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.14256.1.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.2.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.1.S1_x_at4/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.3.S1_x_at2/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43340Os.52452.1.S1_x_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43340OsAffx.4073.1.S1_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43350Os.54114.1.S1_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43350OsAffx.4074.1.S1_s_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43360Os.52541.1.S1_at10/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43360Os.27742.1.S1_at1/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54303.1.S1_at--298--411Chr04:25393143..25393167 (25 bp)
ATCAGTTCTGATGTTCATGGCTCCT
LOC_Os04g43300
Os.54303.1.S1_at--196--6231Chr04:25393116..25393140 (25 bp)
GATGGCCCTCGCATGGGAAGACTAC
LOC_Os04g43300
Os.54303.1.S1_at--493--3011Chr04:25392994..25393015 (22 bp)
AATGCACCACATCTGTTTGCAGGAT
LOC_Os04g43300
Os.54303.1.S1_at--635--6591Chr04:25392972..25392996 (25 bp)
GATTGACCTTTTACTTCAGTGGCCA
LOC_Os04g43300
Os.54303.1.S1_at--703--8451Chr04:25392953..25392977 (25 bp)
TGGCCATTTCATGCCCAATTACAAG
LOC_Os04g43300
Os.54303.1.S1_at--853--10471Chr04:25392848..25392872 (25 bp)
TTACAGCATGGAGCCACCACAAGGA
LOC_Os04g43300
Os.54303.1.S1_at--414--8191Chr04:25392826..25392850 (25 bp)
GGAAGTGATCCTGATACCCTTAATG
LOC_Os04g43300
Os.54303.1.S1_at--1135--3171Chr04:25392768..25392792 (25 bp)
AATTGGCGGCAACGATTGGCTCCAG
LOC_Os04g43300
Os.54303.1.S1_at--1038--1071Chr04:25392745..25392769 (25 bp)
AGGGCTGTTCCTCATACATGTGTTC
LOC_Os04g43300
Os.54303.1.S1_at--564--3511Chr04:25392729..25392753 (25 bp)
CATGTGTTCTGGATTCTATTGCATC
LOC_Os04g43300
Os.54303.1.S1_at--442--3171Chr04:25392693..25392717 (25 bp)
AATTGACCATGTGATGCTGTATCTT
LOC_Os04g43300
Target Sequence 
ATCAGTTCTGATGTTCATGGCTCCTTTGATGGCCCTCGCATGGGAAGACTACGAGCNATGCAAAATGCACCACATCTGTT
TGCAGGATTGACCTTTTACTTCAGTGGCCATTTCATGCCCAATTACAAGGTTCACCTNTGAAGATTTGATCACTGCANGC
TGNGNGGGATCAATCTTGGACAAGGCTGATNCTCTCTAGCACATCCTTGATAATTTACAGCATGGAGCCACCACAAGGAA
GTGATCCTGATACCCTTAATGAGGTCATCAGAAAGAGGAAGGCTGAGGCTGAAGAATTGGCGGCAACGATTGGCTCCAGG
GCTGTTCCTCATACATGTGTTCTGGATTCTATTGCATCNTGCACAGTGCAATTGACCATGTGATGCTGTATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis