Browse Element(s) Details


Os.52452.1.S1_x_at

Description gb:AK067204.1
DB_XREF= gi:32977222
TID=Os.52452.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52452 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013096P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013096P20, full insert sequence.
FL= gb:AK067204.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4334011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43290Os.47938.1.S1_at11/114+25389146..25391994actin-related protein 2/3 complex 34kDa subunit family, putative, expressed
LOC_Os04g43300Os.54303.1.S1_at11/114+25392578..25396729BRCA1 C Terminus domain containing protein, expressed
LOC_Os04g43310Os.55299.1.S1_at10/114+25399526..25400243expressed protein
LOC_Os04g43324OsAffx.26442.2.S1_x_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.14256.1.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.2.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.1.S1_x_at4/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.3.S1_x_at2/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43340Os.52452.1.S1_x_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43340OsAffx.4073.1.S1_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43350Os.54114.1.S1_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43350OsAffx.4074.1.S1_s_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43360Os.52541.1.S1_at10/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43360Os.27742.1.S1_at1/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43370NANA4+25427025..25427581Pectinesterase precursor, putative
LOC_Os04g43380NANA4+25431037..25433551transposon protein, putative, unclassified
LOC_Os04g43390Os.35154.1.S1_x_at6/114+25439253..25447635Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52452.1.S1_x_at--694--651Chr04:25414826..25414850 (25 bp)
ATGAATGAATCCCAATACCCTGGCC
LOC_Os04g43340
Os.52452.1.S1_x_at--830--3811Chr04:25414802..25414826 (25 bp)
CTGCGAACTTTGCTGGTTGTCCAGA
LOC_Os04g43340
Os.52452.1.S1_x_at--498--3091Chr04:25414682..25414706 (25 bp)
AATACTGACATGGAGGGCCTGCCAA
LOC_Os04g43340
Os.52452.1.S1_x_at--407--2171Chr04:25414638..25414662 (25 bp)
ACACCTTAGGTACCTCAGTCTTGAG
LOC_Os04g43340
Os.52452.1.S1_x_at--215--2271Chr04:25414606..25414630 (25 bp)
AAATCAAGTGCCTGCCAGAGTCAAT
LOC_Os04g43340
Os.52452.1.S1_x_at--316--1231Chr04:25414580..25414604 (25 bp)
AGTTCTCTATTCAAGTTGCACACGA
LOC_Os04g43340
Os.52452.1.S1_x_at--661--5431Chr04:25414554..25414578 (25 bp)
GAACCTCAAGTGTTGCAACTATCTT
LOC_Os04g43340
Os.52452.1.S1_x_at--1052--2511Chr04:25414538..25414562 (25 bp)
AACTATCTTAGTGAGCTGCCACAAG
LOC_Os04g43340
Os.52452.1.S1_x_at--589--9771Chr04:25414492..25414516 (25 bp)
TAAGGCATCTTGAACTACCACGCAT
LOC_Os04g43340
Os.52452.1.S1_x_at--694--3011Chr04:25414410..25414434 (25 bp)
AATGCACACGATCAAGTTCACAAGT
LOC_Os04g43340
Os.52452.1.S1_x_at--91--6591Chr04:25414368..25414392 (25 bp)
GATTGCTGACTTGGTTAACTTGGAC
LOC_Os04g43340
Target Sequence 
ATGAATGAATCCCAATACCCTGGCCTGCGAACTTTGCTGGTTGTCCAGAGAACCAAACATGACGATGGAAGAAAAACTTC
GAGCATACAAAAACCAAGTGTTCTGTTCAAAGCTTTTGTATGTTTAAGGGCTCTGGATTTGAGTAATACTGACATGGAGG
GCCTGCCAAACTCTATTGGGGAACTGATACACCTTAGGTACCTCAGTCTTGAGAACACCAAAATCAAGTGCCTGCCAGAG
TCAATAAGTTCTCTATTCAAGTTGCACACGATGAACCTCAAGTGTTGCAACTATCTTAGTGAGCTGCCACAAGGGATAAA
ATTCCTTGCTAACTTAAGGCATCTTGAACTACCACGCATAGATAACTGGAATGTGTACATGCCATGTGGAATTTCTGAAT
TAACTAATCTCCAAACAATGCACACGATCAAGTTCACAAGTGATTCAGGAAGTTGTGGGATTGCTGACTTGGTTAACTTG
GAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52452.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis