Browse Element(s) Details


Os.47938.1.S1_at

Description gb:AK071791.1
DB_XREF= gi:32981814
TID=Os.47938.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023114E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023114E05, full insert sequence.
FL= gb:AK071791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4329011/11actin-related protein 2/3 complex 34kDa subunit family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43240OsAffx.18229.1.S1_x_at1/114+25365486..25366283hypothetical protein
LOC_Os04g43250NANA4+25366954..25371558retrotransposon protein, putative, unclassified
LOC_Os04g43260NANA4+25372148..25375134hypothetical protein
LOC_Os04g43270OsAffx.4072.1.S1_at11/114+25380376..25383164CER1, putative
LOC_Os04g43280OsAffx.14255.1.S1_at10/114+25385580..25387053possible aldehyde decarbonylase, putative
LOC_Os04g43290Os.47938.1.S1_at11/114+25389146..25391994actin-related protein 2/3 complex 34kDa subunit family, putative, expressed
LOC_Os04g43300Os.54303.1.S1_at11/114+25392578..25396729BRCA1 C Terminus domain containing protein, expressed
LOC_Os04g43310Os.55299.1.S1_at10/114+25399526..25400243expressed protein
LOC_Os04g43324OsAffx.26442.2.S1_x_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.14256.1.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.2.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.1.S1_x_at4/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.3.S1_x_at2/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43340Os.52452.1.S1_x_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43340OsAffx.4073.1.S1_at11/114+25412748..25417723NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007015biological_processactin filament organization
GO:0005885cellular_componentArp2/3 protein complex
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47938.1.S1_at--579--1111Chr04:25389590..25389614 (25 bp)
AGTGCTTCCCAGTGCTCAAACTGAC
LOC_Os04g43290
Os.47938.1.S1_at--315--9091Chr04:25389578..25389602 (25 bp)
TGCTCAAACTGACCATGGCACAGAG
LOC_Os04g43290
Os.47938.1.S1_at--1084--4711Chr04:25389532..25389556 (25 bp)
GCTGGAGTGAATCCTAATCAACTTT
LOC_Os04g43290
Os.47938.1.S1_at--995--9691Chr04:25389515..25389539 (25 bp)
TCAACTTTACGACTAATCACTTTTT
LOC_Os04g43290
Os.47938.1.S1_at--390--10351Chr04:25389490..25389514 (25 bp)
TTTTTCACAGCACAGGCACAAGCGT
LOC_Os04g43290
Os.47938.1.S1_at--107--4671Chr04:25389469..25389493 (25 bp)
GCGTGGTGATACATGCATGCTGACT
LOC_Os04g43290
Os.47938.1.S1_at--246--651Chr04:25389457..25389481 (25 bp)
ATGCATGCTGACTCTTATCCTTTTT
LOC_Os04g43290
Os.47938.1.S1_at--561--3751Chr04:25389446..25389470 (25 bp)
CTCTTATCCTTTTTCCATACTGATC
LOC_Os04g43290
Os.47938.1.S1_at--475--6191Chr04:25389350..25389374 (25 bp)
GAGGACAGACAGTACACGGTTATTT
LOC_Os04g43290
Os.47938.1.S1_at--15--10511Chr04:25389206..25389230 (25 bp)
TTCACTTGTGGCCAATCGTGCATTG
LOC_Os04g43290
Os.47938.1.S1_at--125--651Chr04:25389168..25389192 (25 bp)
ATGCATTTTCACTTGACGTACGTCA
LOC_Os04g43290
Target Sequence 
AGTGCTTCCCAGTGCTCAAACTGACCATGGCACAGAGGAAGGAGCAGAAGTACCAGAAGCTGGAGTGAATCCTAATCAAC
TTTACGACTAATCACTTTTTTTTTTCACAGCACAGGCACAAGCGTGGTGATACATGCATGCTGACTCTTATCCTTTTTCC
ATACTGATCAAGTATACAAATCTGGTGAGTGATGAACATCCATTCAGATGGAGGGCACTACCATAGAAAAAGGCTAACAG
GAGGACAGACAGTACACGGTTATTTAAAAACCGTTACATATATCTAAAAAATATCATAGACGACTATATTAGGAATTGTC
TATGATAAAAAGCATCTAGTGTGTTTTTTTTCTTTTGAAAAGCACGANTGTGTTTTTTGTTATTTTCACTTGTGGCCAAT
CGTGCATTGGATTGTGGAAAACATGCATTTTCACTTGACGTACGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis