Browse Element(s) Details


OsAffx.26442.2.S1_x_at

Description tigr:9632.m04151
TID=OsAffx.26442.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=G-patch domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4332411/11G-patch domain containing protein
LOC_Os01g416704/11G-patch domain containing protein
LOC_Os04g424602/11G-patch domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43270OsAffx.4072.1.S1_at11/114+25380376..25383164CER1, putative
LOC_Os04g43280OsAffx.14255.1.S1_at10/114+25385580..25387053possible aldehyde decarbonylase, putative
LOC_Os04g43290Os.47938.1.S1_at11/114+25389146..25391994actin-related protein 2/3 complex 34kDa subunit family, putative, expressed
LOC_Os04g43300Os.54303.1.S1_at11/114+25392578..25396729BRCA1 C Terminus domain containing protein, expressed
LOC_Os04g43310Os.55299.1.S1_at10/114+25399526..25400243expressed protein
LOC_Os04g43324OsAffx.26442.2.S1_x_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.14256.1.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.2.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.1.S1_x_at4/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.3.S1_x_at2/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43340Os.52452.1.S1_x_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43340OsAffx.4073.1.S1_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43350Os.54114.1.S1_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43350OsAffx.4074.1.S1_s_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43360Os.52541.1.S1_at10/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43360Os.27742.1.S1_at1/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43370NANA4+25427025..25427581Pectinesterase precursor, putative
LOC_Os04g43380NANA4+25431037..25433551transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26442.2.S1_x_at--1078--1871Chr04:25409200..25409224 (25 bp)
ACGAGGCCGAGTAAGCTGAGCGTCT
LOC_Os04g43324
OsAffx.26442.2.S1_x_at--293--7493Chr04:25409227..25409251 (25 bp)
GTGGGCATGTGGATTCCTCATCTCA
LOC_Os04g43324
OsAffx.26442.2.S1_x_at--206--1813Chr04:25409255..25409279 (25 bp)
ACGCCCGCCTACGAATAGTGTACAT
LOC_Os04g43324
OsAffx.26442.2.S1_x_at--87--7491Chr04:25409312..25409336 (25 bp)
GTGGGATCTCTGAGTACGACTACAA
LOC_Os04g43324
OsAffx.26442.2.S1_x_at--336--5711Chr04:25409329..25409353 (25 bp)
GACTACAAGCTTGCGTTGCCATGGA
LOC_Os04g43324
OsAffx.26442.2.S1_x_at--780--8972Chr04:25409382..25409406 (25 bp)
TGAACACATTGAGCGGCACGTGCTG
LOC_Os04g43324
OsAffx.26442.2.S1_x_at--294--8251Chr04:25409396..25409420 (25 bp)
GGCACGTGCTGCCTCATCTGAGGAA
LOC_Os04g43324
OsAffx.26442.2.S1_x_at--1140--471Chr04:25409411..25409435 (25 bp)
ATCTGAGGAAGGCTCTCCATGACCT
LOC_Os04g43324
OsAffx.26442.2.S1_x_at--253--2211Chr04:25409471..25409495 (25 bp)
ACAACTTCTTCCCTCTTGTAATGAG
LOC_Os04g43324
OsAffx.26442.2.S1_x_at--958--7952Chr04:25409561..25409585 (25 bp)
GGATGTACGCCAACTATCGGTACCT
LOC_Os04g43324
OsAffx.26442.2.S1_x_at--61--5352Chr04:25409637..25409661 (25 bp)
GAAAGGGCTTTTCACGCCGGAACTG
LOC_Os04g43324
Target Sequence 
ACGAGGCCGAGTAAGCTGAGCGTCTGTGTGGGCATGTGGATTCCTCATCTCAGCCACGCCCGCCTACGAATAGTGTACAT
TATAAGCAGGCGGCTCAGAGATTGGCTGTGCGGTGGGATCTCTGAGTACGACTACAAGCTTGCGTTGCCATGGAAAAAGG
TGTTCGATCCAGCGAGCTGGGATGAACACATTGAGCGGCACGTGCTGCCTCATCTGAGGAAGGCTCTCCATGACCTCGAG
ATCTCGATAAGAATGACTTGGCTACAAAACAACAACTTCTTCCCTCTTGTAATGAGGTGGGCATCCATCGTGCCGGTGAA
GTACATGGTGCCACTTTTGATACAAGGGTTCTTCAAGAAATGGATGTACGCCAACTATCGGTACCTAATGGGCGAGAGGC
CCCGGTTGGATGAGGCGATGGCTTGGTATGAAGTGTGGAAAGGGCTTTTCACGCCGGAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26442.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis