Browse Element(s) Details


OsAffx.4074.1.S1_s_at

Description tigr:9632.m04154
TID=OsAffx.4074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4335011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43300Os.54303.1.S1_at11/114+25392578..25396729BRCA1 C Terminus domain containing protein, expressed
LOC_Os04g43310Os.55299.1.S1_at10/114+25399526..25400243expressed protein
LOC_Os04g43324OsAffx.26442.2.S1_x_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.14256.1.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.2.S1_at11/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.1.S1_x_at4/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43324OsAffx.26442.3.S1_x_at2/114+25408018..25412345G-patch domain containing protein
LOC_Os04g43340Os.52452.1.S1_x_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43340OsAffx.4073.1.S1_at11/114+25412748..25417723NB-ARC domain containing protein, expressed
LOC_Os04g43350Os.54114.1.S1_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43350OsAffx.4074.1.S1_s_at11/114+25418160..25420248hypothetical protein
LOC_Os04g43360Os.52541.1.S1_at10/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43360Os.27742.1.S1_at1/114+25421238..25425511Glycosyl hydrolase family 1 protein, expressed
LOC_Os04g43370NANA4+25427025..25427581Pectinesterase precursor, putative
LOC_Os04g43380NANA4+25431037..25433551transposon protein, putative, unclassified
LOC_Os04g43390Os.35154.1.S1_x_at6/114+25439253..25447635Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4074.1.S1_s_at--676--7311Chr04:25418267..25418291 (25 bp)
GTGCTCCGCCAGAAGGTTCTCCAGA
LOC_Os04g43350
OsAffx.4074.1.S1_s_at--66--3411Chr04:25418276..25418300 (25 bp)
CAGAAGGTTCTCCAGATTCGTAGCC
LOC_Os04g43350
OsAffx.4074.1.S1_s_at--344--111Chr04:25418291..25418315 (25 bp)
ATTCGTAGCCAGGAGTAGCGGCGGC
LOC_Os04g43350
OsAffx.4074.1.S1_s_at--348--4691Chr04:25418317..25418341 (25 bp)
GCGGCGGGACCAATCCAGGGCCCAA
LOC_Os04g43350
OsAffx.4074.1.S1_s_at--337--3011Chr04:25418328..25418348 (21 bp)
AATCCAGGGCCCAAACCAGGTGACG
LOC_Os04g43350
OsAffx.4074.1.S1_s_at--133--3471Chr04:25418332..25418461 (25 bp)
CAGGGCCCAAACCAGGTGACGATGA
LOC_Os04g43350
OsAffx.4074.1.S1_s_at--814--1711Chr04:25418450..25418471 (22 bp)
ACCAGGTGACGATGAGAGCAAGGCT
LOC_Os04g43350
OsAffx.4074.1.S1_s_at--372--4052Chr04:25418456..25418480 (25 bp)
CGATGAGAGCAAGGCTGTGCTTGAC
LOC_Os04g43350
OsAffx.4074.1.S1_s_at--759--8831Chr04:25418477..25418501 (25 bp)
TGACGCCTTCTTCCTTGGGAAGGCC
LOC_Os04g43350
OsAffx.4074.1.S1_s_at--63--3311Chr04:25418486..25418510 (25 bp)
CTTCCTTGGGAAGGCCTTCGCCGAG
LOC_Os04g43350
OsAffx.4074.1.S1_s_at--720--891Chr04:25418509..25418533 (25 bp)
AGGCGCTGACCGAGAAGGTGGAGTC
LOC_Os04g43350
Target Sequence 
GTGCTCCGCCAGAAGGTTCTCCAGATTCGTAGCCAGGAGTAGCGGCGGCGGCGGCGGGACCAATCCAGGGCCCAAACCAG
GTGACGATGAGAGCAAGGCTGTGCTTGACGCCTTCTTCCTTGGGAAGGCCTTCGCCGAGGCGCTGACCGAGAAGGTGGAG
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4074.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis