Browse Element(s) Details


OsAffx.26442.3.S1_x_at

Description tigr:9632.m04052
TID=OsAffx.26442.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=G-patch domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4246011/11G-patch domain containing protein
LOC_Os01g416703/11G-patch domain containing protein
LOC_Os04g433242/11G-patch domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42420Os.8504.1.S1_at10/114+24883223..24888558nodulin, putative, expressed
LOC_Os04g42430Os.14996.2.S1_a_at11/114+24891950..24896092EF hand family protein, expressed
LOC_Os04g42444Os.54519.1.S1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444Os.52102.1.A1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_s_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_at7/114+24899143..24903598expressed protein
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed
LOC_Os04g42480Os.52652.1.S1_at11/114+24921115..24926056Nodulation receptor kinase precursor, putative, expressed
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42500Os.6817.1.S1_at11/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42500OsAffx.26429.1.S1_at10/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26442.3.S1_x_at--511--8192Chr04:24905593..24905617 (25 bp)
GGAAGCTCACATTGGGCGGCCTGAT
LOC_Os04g42460
OsAffx.26442.3.S1_x_at--750--4471Chr04:24905611..24905635 (25 bp)
GCCTGATCCATGAGTTCGCGGGAGT
LOC_Os04g42460
OsAffx.26442.3.S1_x_at--1078--1671Chr04:24905724..24905810 (25 bp)
AGCCGGCAGTACAGCGCAGGACACG
LOC_Os04g42460
OsAffx.26442.3.S1_x_at--797--851Chr04:24905862..24905886 (25 bp)
ATGGCACCTCCCTTGGATGCGTGGT
LOC_Os04g42460
OsAffx.26442.3.S1_x_at--127--9191Chr04:24905897..24905921 (25 bp)
TGCCTCCTTCTGCAAGCTACCATGG
LOC_Os04g42460
OsAffx.26442.3.S1_x_at--538--7991Chr04:24905932..24905956 (25 bp)
GGATGAGGTCATCTTGCCCACGCTG
LOC_Os04g42460
OsAffx.26442.3.S1_x_at--830--9132Chr04:24906011..24906035 (25 bp)
TGCGTGGGCATGTGGATTCCTCATC
LOC_Os04g42460
OsAffx.26442.3.S1_x_at--208--1813Chr04:25409255..25409279 (25 bp)
ACGCCCGCCTACGAATAGTGTACAT
LOC_Os04g43324
OsAffx.26442.3.S1_x_at--634--9793Chr04:24906072..24906096 (25 bp)
TAAGCAGGCGGCTCAGAGATCACCT
LOC_Os04g42460
OsAffx.26442.3.S1_x_at--94--8371Chr04:24906101..24906125 (25 bp)
GGCGGGATCTCTGACTATGACTACA
LOC_Os04g42460
OsAffx.26442.3.S1_x_at--1045--3691Chr04:24906115..24906139 (25 bp)
CTATGACTACAAGCTTGCATTGCCA
LOC_Os04g42460
Target Sequence 
GGAAGCTCACATTGGGCGGCCTGATCCATGAGTTCGCGGGAGTGAAGGCGAAGTTCCCGGAGGAGTACAGGACGAACAGT
ATGCCGTACAAGGCGATCAGCTTCGCGGCGCCGCTGCTCCACTCGCAGCTGAGCCGGCAGTACAGCGCAGGACACGCTGG
GAGCGGACGCATCAGCGGCGTACCCTCGCCTGATCCACGACCTCGTGATGGCACCTCCCTTGGATGCGTGGTGGTGGAGC
GCTGCCTCCTTCTGCAAGCTACCATGGATTCCATCCTGGATGAGGTCATCTTGCCCACGCTGGTAGCCGCGGCGGACGTG
TTTAGGCTGACGACGTGGTCGAGTAAGCCGAGCGTTTGCGTGGGCATGTGGATTCCTCATCTCGGCCACGCCCGCCTACG
AATAGTGTACATCATTATAAGCAGGCGGCTCAGAGATCACCTGTGCGGCGGGATCTCTGACTATGACTACAAGCTTGCAT
TGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26442.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis