Browse Element(s) Details


OsAffx.14242.1.S1_s_at

Description tigr:9632.m04051
TID=OsAffx.14242.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4244411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42420Os.8504.1.S1_at10/114+24883223..24888558nodulin, putative, expressed
LOC_Os04g42430Os.14996.2.S1_a_at11/114+24891950..24896092EF hand family protein, expressed
LOC_Os04g42444Os.54519.1.S1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444Os.52102.1.A1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_s_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_at7/114+24899143..24903598expressed protein
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed
LOC_Os04g42480Os.52652.1.S1_at11/114+24921115..24926056Nodulation receptor kinase precursor, putative, expressed
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14242.1.S1_s_at--154--7591Chr04:24902923..24902947 (25 bp)
GGGCATTATAACGAGCGAAAGGCTG
LOC_Os04g42444
OsAffx.14242.1.S1_s_at--844--6671Chr04:24902444..24902468 (25 bp)
GTTGCTCCCGAGGTACTGCACAGAT
LOC_Os04g42444
OsAffx.14242.1.S1_s_at--1096--9291Chr04:24902439..24902463 (25 bp)
TCCCGAGGTACTGCACAGATATGTT
LOC_Os04g42444
OsAffx.14242.1.S1_s_at--912--5111Chr04:24902427..24902451 (25 bp)
GCACAGATATGTTATAGACCAGAAT
LOC_Os04g42444
OsAffx.14242.1.S1_s_at--272--5851Chr04:24902411..24902435 (25 bp)
GACCAGAATCTTAGGTACTGCACTT
LOC_Os04g42444
OsAffx.14242.1.S1_s_at--605--2951Chr04:24902405..24902429 (25 bp)
AATCTTAGGTACTGCACTTATGGAC
LOC_Os04g42444
OsAffx.14242.1.S1_s_at--975--7831Chr04:24902398..24902422 (25 bp)
GGTACTGCACTTATGGACCAAAATC
LOC_Os04g42444
OsAffx.14242.1.S1_s_at--399--5111Chr04:24902392..24902416 (25 bp)
GCACTTATGGACCAAAATCTGATGT
LOC_Os04g42444
OsAffx.14242.1.S1_s_at--937--771Chr04:24902371..24902395 (25 bp)
ATGTGTGGTCAGCTACAGTGGTACT
LOC_Os04g42444
OsAffx.14242.1.S1_s_at--649--7551Chr04:24902365..24902389 (25 bp)
GGTCAGCTACAGTGGTACTTAACGT
LOC_Os04g42444
OsAffx.14242.1.S1_s_at--255--3471Chr04:24902356..24902380 (25 bp)
CAGTGGTACTTAACGTTTTGATGAG
LOC_Os04g42444
Target Sequence 
GGGCATTATAACGAGCGAAAGGCTGCAGAGATTAAAGACGATGTTCTGGCACTGTCAGGTTTCACCGAGTTGATTGGGAG
TCCATATTATGTTGCTCCCGAGGTACTGCACAGATATGTTATAGACCAGAATCTTAGGTACTGCACTTATGGACCAAAAT
CTGATGTGTGGTCAGCTACAGTGGTACTTAACGTTTTGATGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14242.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis