Browse Element(s) Details


Os.54519.1.S1_at

Description gb:AK105505.1
DB_XREF= gi:32990714
TID=Os.54519.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54519 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-D11, full insert sequence.
FL= gb:AK105505.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4244411/11expressed protein
LOC_Os03g620401/11retrotransposon protein, putative, unclassified, expressed
LOC_Os03g036601/11Calcium-dependent protein kinase, isoform 11, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42420Os.8504.1.S1_at10/114+24883223..24888558nodulin, putative, expressed
LOC_Os04g42430Os.14996.2.S1_a_at11/114+24891950..24896092EF hand family protein, expressed
LOC_Os04g42444Os.54519.1.S1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444Os.52102.1.A1_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_s_at11/114+24899143..24903598expressed protein
LOC_Os04g42444OsAffx.14242.1.S1_at7/114+24899143..24903598expressed protein
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed
LOC_Os04g42480Os.52652.1.S1_at11/114+24921115..24926056Nodulation receptor kinase precursor, putative, expressed
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006499biological_processN-terminal protein myristoylation
GO:0005777cellular_componentperoxisome
GO:0005789cellular_componentendoplasmic reticulum membrane
GO:0016020cellular_componentmembrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54519.1.S1_at--154--4051Chr04:24902865..24902889 (25 bp)
CGATAGACATCCGTAGGCTGCAGAG
LOC_Os04g42444
Os.54519.1.S1_at--541--10031Chr04:24902862..24902886 (25 bp)
TAGACATCCGTAGGCTGCAGAGATT
LOC_Os04g42444
Os.54519.1.S1_at--1042--7611Chr04:24902126..24902150 (25 bp)
GGGAAAATGCTCTCTCAATATTCTT
LOC_Os04g42444
Os.54519.1.S1_at--42--2291Chr04:24902122..24902146 (25 bp)
AAATGCTCTCTCAATATTCTTCAGA
LOC_Os04g42444
Os.54519.1.S1_at--409--10211Chr04:24902108..24902132 (25 bp)
TATTCTTCAGAGCATTTGAACTTTG
LOC_Os04g42444
Os.54519.1.S1_at--298--7051Chr04:24902057..24902081 (25 bp)
GTAAGTATAATTGACCTATTTCTTC
LOC_Os04g42444
Os.54519.1.S1_at--686--9612Chr03:35090836..35090860 (25 bp)
TCACCTAAATTAGTTGCCCTTTTGT
LOC_Os03g62040
Os.54519.1.S1_at--963--3131Chr04:24902027..24902051 (25 bp)
AATTAGTTGCCCTTTTGTTTCATTG
LOC_Os04g42444
Os.54519.1.S1_at--365--10052Chr03:1605759..1605778 (20 bp)
TAGTTGCCCTTTTGTTTCATTGCCT
LOC_Os03g03660
Os.54519.1.S1_at--899--4471Chr04:24902003..24902027 (25 bp)
GCCTGTCCATATTGCTGAGTAGCTA
LOC_Os04g42444
Os.54519.1.S1_at--680--9111Chr04:24901991..24902015 (25 bp)
TGCTGAGTAGCTATACATTGTTCAT
LOC_Os04g42444
Target Sequence 
CGATAGACATCCGTAGGCTGCAGAGATTAAAGACGATGGTCTGTCAATTAAGGCGATAGACATCCGTGTTCTTCAAACCA
GGTCAGGTTTCACCGAGTTGATTGGGAGTCCATATTATGTTGCTCCCGAGGTACTGCACAGATATGTTATAGACCAGAAT
CTTAGGTACTGCACTTATGGACCAAAATCTGATGTGTGGTCAGCTACAGTGGTACTTAACGTTTTGATGAGTGGAGTGCC
ACCATTTTGGGCAGAGACACAACAAGGAAAATATTTGATGCAGTTCTGAAGGGTCTCATTGATTTTCAATCAGTTCTAAA
GATATCTGACAATGAGAAGTATCATATAGGGAAAATGCTCTCTCAATATTCTTCAGAGCATTTGAACTTTGAAGGGCCAT
GAAGTGCTAACTGCTAAGTAAGTATAATTGACCTATTTCTTCACCTAAATTAGTTGCCCTTTTGTTTCATTGCCTGTCCA
TATTGCTGAGTAGCTATACATTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54519.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis