Browse Element(s) Details


OsAffx.26429.1.S1_at

Description tigr:9632.m04061
TID=OsAffx.26429.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=sedlin. (human
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4250010/11Sedlin, N-terminal conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed
LOC_Os04g42480Os.52652.1.S1_at11/114+24921115..24926056Nodulation receptor kinase precursor, putative, expressed
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42500Os.6817.1.S1_at11/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42500OsAffx.26429.1.S1_at10/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42520Os.7457.1.S1_a_at11/114+24946595..24951654Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os04g42530OsAffx.4057.1.S1_at11/114+24955169..24955534hypothetical protein
LOC_Os04g42540Os.5770.1.S1_at11/114+24955687..24956651expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26429.1.S1_at--383--6631Chr04:24932132..24932231 (25 bp)
GTTGTGTCTGTTTATTTTTACCTGT
LOC_Os04g42500
OsAffx.26429.1.S1_at--420--6811Chr04:24932243..24932267 (25 bp)
GTTTTCTTTAACTTGATGACACATG
LOC_Os04g42500
OsAffx.26429.1.S1_at--730--9491NONE
TCTCGCAAGGAGTAGCTTACCGGTG
NONE
OsAffx.26429.1.S1_at--799--4891Chr04:24933468..24933492 (25 bp)
GCTTACCGGTGAACAGCAATCTGAT
LOC_Os04g42500
OsAffx.26429.1.S1_at--688--3271Chr04:24933499..24933523 (25 bp)
CAACAGCGATCGATGCGTGTGCGGT
LOC_Os04g42500
OsAffx.26429.1.S1_at--751--7471Chr04:24933522..24933546 (25 bp)
GTGTGATGGTGCGTACGGCCAACAT
LOC_Os04g42500
OsAffx.26429.1.S1_at--861--6991Chr04:24933534..24933558 (25 bp)
GTACGGCCAACATCAGTCGACAGCT
LOC_Os04g42500
OsAffx.26429.1.S1_at--177--3991Chr04:24933581..24933605 (25 bp)
CGGGAGCGATTCTGGGAGCACACAT
LOC_Os04g42500
OsAffx.26429.1.S1_at--61--8651Chr04:24933593..24933617 (25 bp)
TGGGAGCACACATCCTCTGACGAGC
LOC_Os04g42500
OsAffx.26429.1.S1_at--854--10151Chr04:24933619..24933721 (25 bp)
TATCGCAGCCTGTCAGGTCAATCAG
LOC_Os04g42500
OsAffx.26429.1.S1_at--684--8051Chr04:24933721..24933745 (25 bp)
GGAGATGAGATGCTACACGACCAAG
LOC_Os04g42500
Target Sequence 
GTTGTGTCTGTTTATTTTTACCTGTACAACAATATTGTTTTCTTTAACTTGATGACACATGCTAGATTCATGTTGCTTCA
TGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGTCCATGAGCTTTATATCAAGATATTCCTCAATCCCC
TCTATCTGCCTGGATCTCGCATCACATCCTCTCATTTTGATACCAAGGTCAGGGCTCTCGCAAGGAGTAGCTTACCGGTG
AACAGCAATCTGATAAACATCAACAGCGATCGATGCGTGTGCGGTGTGATGGTGCGTACGGCCAACATCAGTCGACAGCT
GATTGGGGGGAGGAGAAGATCTCGGGAGCGATTCTGGGAGCACACATCCTCTGACGAGCCTATCGCAGCCTGTCAGGTCA
ATCAGGAGATGAGATGCTACACGACCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis