Browse Element(s) Details


Os.6817.1.S1_at

Description gb:AK121895.1
DB_XREF= gi:37991518
TID=Os.6817.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6817 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105D14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105D14, full insert sequence.
FL= gb:AK121895.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4250011/11Sedlin, N-terminal conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42460OsAffx.26442.3.S1_x_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.3.S1_at11/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.1.S1_x_at3/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42460OsAffx.26442.2.S1_x_at2/114+24904287..24906169G-patch domain containing protein
LOC_Os04g42470Os.4671.2.S1_a_at11/114+24907660..24915263F-box protein FBL2, putative, expressed
LOC_Os04g42480Os.52652.1.S1_at11/114+24921115..24926056Nodulation receptor kinase precursor, putative, expressed
LOC_Os04g42490Os.49197.2.S1_x_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490Os.49197.1.S1_at11/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42490OsAffx.18976.1.S1_at1/114+24926782..24930497DIE2/ALG10 family, putative, expressed
LOC_Os04g42500Os.6817.1.S1_at11/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42500OsAffx.26429.1.S1_at10/114+24930681..24933778Sedlin, N-terminal conserved region family protein, expressed
LOC_Os04g42520Os.7457.1.S1_a_at11/114+24946595..24951654Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os04g42530OsAffx.4057.1.S1_at11/114+24955169..24955534hypothetical protein
LOC_Os04g42540Os.5770.1.S1_at11/114+24955687..24956651expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6817.1.S1_at--759--7051Chr04:24932147..24932276 (25 bp)
GTAACTGCAGGTCATGCTAGATTCA
LOC_Os04g42500
Os.6817.1.S1_at--653--3451Chr04:24932745..24932769 (25 bp)
CAGTCATGGAGGTACTATAAGCTTC
LOC_Os04g42500
Os.6817.1.S1_at--969--9571Chr04:24932824..24932848 (25 bp)
TCTTCCATTTATTTCCTGCTGTCAT
LOC_Os04g42500
Os.6817.1.S1_at--103--9131Chr04:24932840..24932864 (25 bp)
TGCTGTCATTATTCAGACTCCTGAG
LOC_Os04g42500
Os.6817.1.S1_at--1093--5711Chr04:24932855..24932879 (25 bp)
GACTCCTGAGAAATGCTGATTGTTT
LOC_Os04g42500
Os.6817.1.S1_at--74--8651Chr04:24932885..24932909 (25 bp)
TGGGCTTTCTCCAGTGCTTATGAAA
LOC_Os04g42500
Os.6817.1.S1_at--189--731Chr04:24932911..24932935 (25 bp)
ATGATTTCAATTTTCACCCATTTTG
LOC_Os04g42500
Os.6817.1.S1_at--974--9371Chr04:24932952..24932976 (25 bp)
TCTATAGAAATGTACCGTTTCCCTT
LOC_Os04g42500
Os.6817.1.S1_at--691--6831Chr04:24932968..24932992 (25 bp)
GTTTCCCTTTTACCGTATAGCATGG
LOC_Os04g42500
Os.6817.1.S1_at--853--51Chr04:24933002..24933026 (25 bp)
ATTGATTTCCTGTTTTCCGTGGCGC
LOC_Os04g42500
Os.6817.1.S1_at--296--3991Chr04:24933019..24933043 (25 bp)
CGTGGCGCGCTAAGACACTCAAATT
LOC_Os04g42500
Target Sequence 
GTAACTGCAGGTCATGCTAGATTCATGTTGCTTCATGATTCACGTAGTGAGGATGGAATTAAAAGCTTTTTTCAAGAGGT
CCATGAGCTTTATATCAAGATATTCCTCAATCCCCTCTATCTGCCTGGATNTCGCATCACATCCTNTCATTTTGATACCA
AGGTCAGGGCTCTCGCAAGGAGGTATNTGTAGGGAACAGTCATGGAGGTACTATAAGCTTCNCAGCTAATAATATAGAAG
CATGCAGAGAGAAGACAAAATACACTACTTTTTTTTCTTCCATTTATTTCCTGCTGTCATTATTCAGACTCCTGAGAAAT
GCTGATTGTTTTTCTTTGGGCTTTCTCCAGTGCTTATGAAACATGATTTCAATTTTCACCCATTTTGTTCTGTACAGGGA
AAATCTATAGAAATGTACCGTTTCCCTTTTACCGTATAGCATGGACACATTGTATTGATTTCCTGTTTTCCGTGGCGCGC
TAAGACACTCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6817.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis