Browse Element(s) Details


Os.54245.1.S1_at

Description gb:AK102761.1
DB_XREF= gi:32987970
TID=Os.54245.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54245 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033107C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107C20, full insert sequence.
FL= gb:AK102761.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4323011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g43170Os.5717.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43170OsAffx.4069.1.S1_at11/114+25332226..25337352Caleosin related protein, expressed
LOC_Os04g43180NANA4+25339915..25340352transposon protein, putative, unclassified
LOC_Os04g43190NANA4+25342548..25343230hypothetical protein
LOC_Os04g43200Os.2694.1.S1_at11/114+25344306..25346108caleosin 2, putative, expressed
LOC_Os04g43210Os.53018.2.S1_x_at11/114+25348627..25352233Sugar transporter family protein, expressed
LOC_Os04g43220Os.27196.1.S1_x_at10/114+25354581..25360581Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g43230Os.54245.1.S1_at11/114+25361853..25363998expressed protein
LOC_Os04g43240OsAffx.18229.1.S1_x_at1/114+25365486..25366283hypothetical protein
LOC_Os04g43250NANA4+25366954..25371558retrotransposon protein, putative, unclassified
LOC_Os04g43260NANA4+25372148..25375134hypothetical protein
LOC_Os04g43270OsAffx.4072.1.S1_at11/114+25380376..25383164CER1, putative
LOC_Os04g43280OsAffx.14255.1.S1_at10/114+25385580..25387053possible aldehyde decarbonylase, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54245.1.S1_at--335--471Chr04:25362380..25362404 (25 bp)
ATCTCCTTGTTCCATTTCAACTGTA
LOC_Os04g43230
Os.54245.1.S1_at--851--2271Chr04:25362345..25362369 (25 bp)
AAAGGCCTGTCCTGGGTGCTTTGAC
LOC_Os04g43230
Os.54245.1.S1_at--12--9671Chr04:25362298..25362322 (25 bp)
TCAGCTACATCATCTCCACGAAGGT
LOC_Os04g43230
Os.54245.1.S1_at--1153--5591Chr04:25362205..25362229 (25 bp)
GACAATGCACACTGTTCTTCAAGAT
LOC_Os04g43230
Os.54245.1.S1_at--154--851Chr04:25362165..25362189 (25 bp)
ATGGAATCCCCAATACGACAAGCAA
LOC_Os04g43230
Os.54245.1.S1_at--1027--7771Chr04:25362131..25362155 (25 bp)
GGTGCATTCAACACTCAAGTCATAT
LOC_Os04g43230
Os.54245.1.S1_at--286--4911Chr04:25362075..25362099 (25 bp)
GCTTCAGTGGGTTGCTGCAGGACAA
LOC_Os04g43230
Os.54245.1.S1_at--117--2551Chr04:25362032..25362056 (25 bp)
AACTCCCTTCAATGTCAGGCTGGAT
LOC_Os04g43230
Os.54245.1.S1_at--1113--3031Chr04:25361994..25362018 (25 bp)
AATCCTCTGCATGAGCTTGTTTCTC
LOC_Os04g43230
Os.54245.1.S1_at--300--9731Chr04:25361946..25361970 (25 bp)
TCAAGTGTGCCAAGTCCTTGTTTGT
LOC_Os04g43230
Os.54245.1.S1_at--829--10791Chr04:25361929..25361953 (25 bp)
TTGTTTGTTGTCCACCTTGTAAGAA
LOC_Os04g43230
Target Sequence 
ATCTCCTTGTTCCATTTCAACTGTAAACCGAGATGAAAGGCCTGTCCTGGGTGCTTTGACGGTCGATGACCTTAAGCAAT
CATCAGCTACATCATCTCCACGAAGGTCTCCCAGCCATAACCGTGAAGAGGCGATCTTGGGTACGGTGGGAAGTTACTGG
AGTAGCACCAAGCAAGACAATGCACACTGTTCTTCAAGATCAGATTCAGGAACCAATGGAATCCCCAATACGACAAGCAA
ATACAGAGAGGTGCATTCAACACTCAAGTCATATGTTTCTTCAGATTTTTGAATGATGTACTGATGCTTCAGTGGGTTGC
TGCAGGACAAAAGGGTAAACTGGCACTCAACTCCCTTCAATGTCAGGCTGGATAGAGCACTGAAGAAATCCTCTGCATGA
GCTTGTTTCTCTTCATTTAAGCGTTTGAAAATTTTCAAGTGTGCCAAGTCCTTGTTTGTTGTCCACCTTGTAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54245.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis