Browse Element(s) Details


Os.12172.1.S1_at

Description gb:AK121273.1
DB_XREF= gi:37990896
TID=Os.12172.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107C15, full insert sequence.
FL= gb:AK121273.1 gb:AK061951.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0899011/11Glutaminyl-tRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08950OsAffx.14604.1.S1_x_at10/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08950OsAffx.14604.1.S1_at8/115+4925698..4929829hypoxanthine phosphoribosyltransferase family protein, expressed
LOC_Os05g08960Os.12803.1.S1_s_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.46302.1.S1_at11/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.12803.1.S1_at7/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.54503.1.A1_at5/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08960Os.5717.1.S1_at1/115+4936303..4942966Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os05g08970Os.54219.1.S1_at11/115+4943452..4949049Structure-specific recognition protein 1 homolog, putative, expressed
LOC_Os05g08980Os.10806.1.S1_at11/115+4949582..4954534expressed protein
LOC_Os05g08990Os.12172.1.S1_at11/115+4954769..4959839Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os05g09000Os.23351.1.A1_at11/115+4961618..4964933expressed protein
LOC_Os05g09010Os.40360.1.S1_at9/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.2.S1_x_at7/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40360.1.S1_x_at6/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.5.S1_x_at3/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.4.S1_x_at2/115+4970285..4973033hypothetical protein
LOC_Os05g09020OsAffx.14605.1.S1_s_at11/115+4976301..4977646WRKY transcription factor 50, putative, expressed
LOC_Os05g09020OsAffx.14605.1.S1_at2/115+4976301..4977646WRKY transcription factor 50, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0006424biological_processglutamyl-tRNA aminoacylation
GO:0004818molecular_functionglutamate-tRNA ligase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12172.1.S1_at--302--9231Chr05:4955474..4955498 (25 bp)
TCCAGGTGTTAACCCGCTCAAAGTG
LOC_Os05g08990
Os.12172.1.S1_at--563--8631Chr05:4955309..4955333 (25 bp)
TGGGTGATCTCAACCCACGATCAAA
LOC_Os05g08990
Os.12172.1.S1_at--263--6471Chr05:4955278..4955302 (25 bp)
GATAAAGGGTGCCTATGCCGTGCCT
LOC_Os05g08990
Os.12172.1.S1_at--679--6771Chr05:4955105..4955129 (25 bp)
GTTACTTTGCTGTGGATTCCGACTC
LOC_Os05g08990
Os.12172.1.S1_at--678--91Chr05:4955090..4955114 (25 bp)
ATTCCGACTCGACGGCTGAGGAACT
LOC_Os05g08990
Os.12172.1.S1_at--225--4711Chr05:4955022..4955046 (25 bp)
GCTGGACCCAAGTGATCGTTTTGTT
LOC_Os05g08990
Os.12172.1.S1_at--1159--7131Chr05:4954960..4954984 (25 bp)
GTCTTTTGTATTGCACCAGCGGTAA
LOC_Os05g08990
Os.12172.1.S1_at--241--10491Chr05:4954902..4954926 (25 bp)
TTACAATCATCTGGAACCGCCTTTT
LOC_Os05g08990
Os.12172.1.S1_at--691--2591Chr05:4954888..4954912 (25 bp)
AACCGCCTTTTGTATTAGCCAGTCA
LOC_Os05g08990
Os.12172.1.S1_at--409--1691Chr05:4954872..4954896 (25 bp)
AGCCAGTCAAACTCTGTTTACTTGA
LOC_Os05g08990
Os.12172.1.S1_at--1058--9111Chr05:4954792..4954816 (25 bp)
TGCTGCAACCCAACAACTGGATGTT
LOC_Os05g08990
Target Sequence 
TCCAGGTGTTAACCCGCTCAAAGTGGAAATCAGATTGTTCGAGAAATTATTTCTTTCAGAGAATCCTGTGGAGCTTGAGG
ATTGGCTGGGTGATCTCAACCCACGATCAAAGGAAGTGATAAAGGGTGCCTATGCCGTGCCTTCGCTTGCAACTGCAGCG
CTGGGGGACAAATTTCAGTTTGAACGNCTCGGTTACTTTGCTGTGGATTCCGACTCGACGGCTGAGGAACTTGTGTTCAA
CAGAACCNGTTACTCTACGGGATTCCTATGGAAAAGCTGGACCCAAGTGATCGTTTTGTTTGTGGTTGAAAAGATTGGTG
TAACAGCATCATTGCTGGTCTTTTGTATTGCACCAGCGGTAAAATACACCAGTGGGNTATACCCCTCAAATTTNGTTTAC
AATCATCTGGAACCGCCTTTTGTATTAGCCAGTCAAACTCTGTTTACTTGACAGTTGCAATAGAAACNCAAAATNTCTGT
GGCANNNNNNNNNNNNANNNNNTCGCTATGCTGCAACCCAACAACTGGATGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12172.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis