Browse Element(s) Details


OsAffx.14605.1.S1_s_at

Description tigr:9633.m00809
TID=OsAffx.14605.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to probable wrky transcription factor 50 (wrky dna-binding protein 50)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0902011/11WRKY transcription factor 50, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g08980Os.10806.1.S1_at11/115+4949582..4954534expressed protein
LOC_Os05g08990Os.12172.1.S1_at11/115+4954769..4959839Glutaminyl-tRNA synthetase, putative, expressed
LOC_Os05g09000Os.23351.1.A1_at11/115+4961618..4964933expressed protein
LOC_Os05g09010Os.40360.1.S1_at9/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.2.S1_x_at7/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40360.1.S1_x_at6/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.5.S1_x_at3/115+4970285..4973033hypothetical protein
LOC_Os05g09010Os.40855.4.S1_x_at2/115+4970285..4973033hypothetical protein
LOC_Os05g09020OsAffx.14605.1.S1_s_at11/115+4976301..4977646WRKY transcription factor 50, putative, expressed
LOC_Os05g09020OsAffx.14605.1.S1_at2/115+4976301..4977646WRKY transcription factor 50, putative, expressed
LOC_Os05g09030NANA5+4987026..4990261transposon protein, putative, unclassified
LOC_Os05g09040NANA5+4990901..4997056transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14605.1.S1_s_at--521--1311Chr05:4976644..4976668 (25 bp)
AGAGAGACCGGGAGGACCACCGCTA
LOC_Os05g09020
OsAffx.14605.1.S1_s_at--889--1751Chr05:4976638..4976662 (25 bp)
ACCGGGAGGACCACCGCTACGTCAT
LOC_Os05g09020
OsAffx.14605.1.S1_s_at--175--4171Chr05:4976490..4976514 (25 bp)
CGCCTATTCGGCAGGCGGCTCGCTG
LOC_Os05g09020
OsAffx.14605.1.S1_s_at--1157--9331Chr05:4976471..4976495 (25 bp)
TCGCTGCTCTTCTGAGGCTGATGAG
LOC_Os05g09020
OsAffx.14605.1.S1_s_at--638--911Chr05:4976457..4976481 (25 bp)
AGGCTGATGAGTTTGTCTAGTACTA
LOC_Os05g09020
OsAffx.14605.1.S1_s_at--603--9471Chr05:4976442..4976466 (25 bp)
TCTAGTACTAGACACGCCCGGGAGC
LOC_Os05g09020
OsAffx.14605.1.S1_s_at--474--1811Chr05:4976429..4976453 (25 bp)
ACGCCCGGGAGCTCTAGCTAGGATA
LOC_Os05g09020
OsAffx.14605.1.S1_s_at--1126--5211Chr05:4976376..4976400 (25 bp)
GAATTTTAATTAATCACCTCACAAA
LOC_Os05g09020
OsAffx.14605.1.S1_s_at--927--9671Chr05:4976363..4976387 (25 bp)
TCACCTCACAAAACTCTGATGTATC
LOC_Os05g09020
OsAffx.14605.1.S1_s_at--760--3771Chr05:4976350..4976374 (25 bp)
CTCTGATGTATCATATTATATCGTG
LOC_Os05g09020
OsAffx.14605.1.S1_s_at--457--251Chr05:4976333..4976357 (25 bp)
ATATCGTGATAGTGACTGCTTGTTA
LOC_Os05g09020
Target Sequence 
AGAGAGACCGGGAGGACCACCGCTACGTCATCACCACCTACGACGGCGTCCACAACCACGCGAGCCCCGCCGCCGCCGCC
GCGGCGCTGCAGTACGCCGCCGCCGCCGGCGACTACTACAGCCCGCCGCTCAGCAGCGCCGGCTCGCCGCCGGCCGCCTA
TTCGGCAGGCGGCTCGCTGCTCTTCTGAGGCTGATGAGTTTGTCTAGTACTAGACACGCCCGGGAGCTCTAGCTAGGATA
GAAAACTAGAGAAAGTTTAATTATACCTGAATTTTAATTAATCACCTCACAAAACTCTGATGTATCATATTATATCGTGA
TAGTGACTGCTTGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14605.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis