Browse Element(s) Details


OsAffx.19540.1.S1_at

Description tigr:9640.m00710
TID=OsAffx.19540.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0779011/11No apical meristem protein
LOC_Os05g088801/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07770NANA12+3917238..3920109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07780Os.14642.1.S1_at11/1112+3931470..3934989Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g07790OsAffx.19540.1.S1_at11/1112+3935376..3937091No apical meristem protein
LOC_Os12g07800Os.54500.1.S1_at9/1112+3939712..3942754D-mannose binding lectin family protein, expressed
LOC_Os12g07810Os.23454.1.A1_at10/1112+3946119..3954901aldehyde dehydrogenase family protein, expressed
LOC_Os12g07820Os.9266.1.S1_at11/1112+3954980..3958804L-ascorbate peroxidase 6, chloroplast precursor, putative, expressed
LOC_Os12g07830Os.18504.1.S1_at11/1112+3959511..3963000L-ascorbate peroxidase 5, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009611biological_processresponse to wounding
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19540.1.S1_at--234--1491Chr12:3935935..3935959 (25 bp)
AGCAAGGCGATCTTGGCCATGACCA
LOC_Os12g07790
OsAffx.19540.1.S1_at--369--8471Chr12:3935862..3935886 (25 bp)
TGGCGCATACGAATTTCACCCGGAA
LOC_Os12g07790
OsAffx.19540.1.S1_at--1055--7331Chr12:3935834..3935858 (25 bp)
GTGCAGATGCTGTCCATTGGCTTCG
LOC_Os12g07790
OsAffx.19540.1.S1_at--1108--4511Chr12:3935805..3935829 (25 bp)
GCCCGACGAACAGTTGTTGCCGCAG
LOC_Os12g07790
OsAffx.19540.1.S1_at--506--8351Chr12:3935762..3935786 (25 bp)
GGCGGCTACGACATGGCTAGCTCCG
LOC_Os12g07790
OsAffx.19540.1.S1_at--125--10871Chr12:3935725..3935749 (25 bp)
TTGGCGACGTGAACGCATATGCCGC
LOC_Os12g07790
OsAffx.19540.1.S1_at--326--1351Chr12:3935637..3935661 (25 bp)
AGAGACAATGCCACCACCGCTGGAC
LOC_Os12g07790
OsAffx.19540.1.S1_at--919--10311Chr12:3935559..3935583 (25 bp)
TTTCAGTGCCTTGCCGTCGGTGCAG
LOC_Os12g07790
OsAffx.19540.1.S1_at--289--971Chr12:3935533..3935557 (25 bp)
AGGAGCCATCCTGTGACGACGGCGA
LOC_Os12g07790
OsAffx.19540.1.S1_at--414--3392Chr05:4883394..4883444 (25 bp)
CAGCGACGAGCCTCTGCCGGATTTG
LOC_Os05g08880
OsAffx.19540.1.S1_at--1090--4451Chr12:3935414..3935438 (25 bp)
GCCGGCATCATGACGGAGTTGGATT
LOC_Os12g07790
Target Sequence 
AGCAAGGCGATCTTGGCCATGACCAGGGGCATCTCGCGGCGGCGCTGACGCCGGAGGAATGTGGCGAGATAGTTGGCGCA
TACGAATTTCACCCGGAAATGGTGCAGATGCTGTCCATTGGCTTCGCCGCGCCCGACGAACAGTTGTTGCCGCAGCTGCT
AGACCCCACCGGCGGCGGCTACGACATGGCTAGCTCCGCCATCGCCGCCGTTGGCGACGTGAACGCATATGCCGCCGCGG
CGCCCACGCCGCGAATTAGACCCAACGCGGCGGAGGCAATGGCGGCGACGGCGACGGCAGAGACAATGCCACCACCGCTG
GACGCCGTGGCGGCCGAGCTATCCGCGCCGCCGCGTGGCTTACCGCCGGAGCTCGCTTTCAGTGCCTTGCCGTCGGTGCA
GCAGGAGCCATCCTGTGACGACGGCGACAACTTCGGCGAGCTCGTGGCGGAGGCGATGCCGCCGTTGATCGGGGAGAACG
CCGGCGTCGATGCCGGCAGCGACGAGCCTCTGCCGGATTTGGCCGGCATCATGACGGAGTTGGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19540.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis