Browse Element(s) Details


Os.54500.1.S1_at

Description gb:AK105397.1
DB_XREF= gi:32990606
TID=Os.54500.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-123-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-C03, full insert sequence.
FL= gb:AK105397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g078009/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07770NANA12+3917238..3920109transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g07780Os.14642.1.S1_at11/1112+3931470..3934989Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g07790OsAffx.19540.1.S1_at11/1112+3935376..3937091No apical meristem protein
LOC_Os12g07800Os.54500.1.S1_at9/1112+3939712..3942754D-mannose binding lectin family protein, expressed
LOC_Os12g07810Os.23454.1.A1_at10/1112+3946119..3954901aldehyde dehydrogenase family protein, expressed
LOC_Os12g07820Os.9266.1.S1_at11/1112+3954980..3958804L-ascorbate peroxidase 6, chloroplast precursor, putative, expressed
LOC_Os12g07830Os.18504.1.S1_at11/1112+3959511..3963000L-ascorbate peroxidase 5, chloroplast precursor, putative, expressed
LOC_Os12g07840OsAffx.19544.1.S1_at11/1112+3966437..3970100dehydration-responsive protein, putative
LOC_Os12g07840OsAffx.19544.1.S1_x_at11/1112+3966437..3970100dehydration-responsive protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54500.1.S1_at--818--5551Chr12:3942354..3942378 (25 bp)
GAAACCAGACTGATCCCAACATGTC
LOC_Os12g07800
Os.54500.1.S1_at--284--6751Chr12:3942397..3942421 (25 bp)
GGGTTACATCGCTCCGGAATGGGTT
LOC_Os12g07800
Os.54500.1.S1_at--82--7871Chr12:3942418..3942442 (25 bp)
GGTTTCTGGTGTTCCCATAACTGAA
LOC_Os12g07800
Os.54500.1.S1_at--739--7591Chr12:3942491..3942515 (25 bp)
GGGCTTCGAATGTCTGAGCTACCAG
LOC_Os12g07800
Os.54500.1.S1_at--836--2611Chr12:3942583..3942607 (25 bp)
AACCGGTGACCAAACATTGATCGAT
LOC_Os12g07800
Os.54500.1.S1_at--27--9011Chr12:3942627..3942651 (25 bp)
TGAATGGCAACTTTGTGCGCTCCGA
LOC_Os12g07800
Os.54500.1.S1_at--639--9151Chr12:3942642..3942666 (25 bp)
TGCGCTCCGAGGTGCTACTGGTGCT
LOC_Os12g07800
Os.54500.1.S1_at--259--1211Chr12:3942669..3942693 (25 bp)
AGTTTGCTGTTCTGTGCCTGGAGAA
LOC_Os12g07800
Os.54500.1.S1_at--1039--391Chr12:3942720..3942744 (25 bp)
ATCATGTGGTGCAGAAGTTCCTTTC
LOC_Os12g07800
Os.54500.1.S1_at--1044--10611Chr12:3942756..3942780 (25 bp)
TTCGACAATTTTCCATGTCCCTGTC
NONE
Os.54500.1.S1_at--403--4271Chr12:3942775..3942799 (25 bp)
CCTGTCGCCTGTTTACCTTAAATGA
NONE
Target Sequence 
GAAACCAGACTGATCCCAACATGTCAAAGATCCGAGGAACTAGGGGTTACATCGCTCCGGAATGGGTTTCTGGTGTTCCC
ATAACTGAAAAGGTTGATGTGTACAGTTACGGAGTGGTGCTTCTGGAGTTAGTCATGGGGCTTCGAATGTCTGAGCTACC
AGCAAATGGCAGTGCAGATGAAGGTGCTGCATTGAGGCAGTTAGTGTGGACAGTAACAGAGAAGATTAAAACCGGTGACC
AAACATTGATCGATGGTGTTGTTGATCCTAGATTGAATGGCAACTTTGTGCGCTCCGAGGTGCTACTGGTGCTGGAGTTT
GCTGTTCTGTGCCTGGAGAAAGAAAGGAACCAAAGACCAAACATGAATCATGTGGTGCAGAAGTTCCTTTCGTATGAATG
AATTCGACAATTTTCCATGTCCCTGTCGCCTGTTTACCTTAAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis