Browse Element(s) Details


Os.18504.1.S1_at

Description gb:AK073910.1
DB_XREF= gi:32983933
TID=Os.18504.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076I03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076I03, full insert sequence.
FL= gb:AK073910.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0783011/11L-ascorbate peroxidase 5, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07780Os.14642.1.S1_at11/1112+3931470..3934989Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g07790OsAffx.19540.1.S1_at11/1112+3935376..3937091No apical meristem protein
LOC_Os12g07800Os.54500.1.S1_at9/1112+3939712..3942754D-mannose binding lectin family protein, expressed
LOC_Os12g07810Os.23454.1.A1_at10/1112+3946119..3954901aldehyde dehydrogenase family protein, expressed
LOC_Os12g07820Os.9266.1.S1_at11/1112+3954980..3958804L-ascorbate peroxidase 6, chloroplast precursor, putative, expressed
LOC_Os12g07830Os.18504.1.S1_at11/1112+3959511..3963000L-ascorbate peroxidase 5, chloroplast precursor, putative, expressed
LOC_Os12g07840OsAffx.19544.1.S1_at11/1112+3966437..3970100dehydration-responsive protein, putative
LOC_Os12g07840OsAffx.19544.1.S1_x_at11/1112+3966437..3970100dehydration-responsive protein, putative
LOC_Os12g07850NANA12+3972955..3975392hypothetical protein
LOC_Os12g07860OsAffx.29764.1.S1_x_at2/1112+3976137..3976930MtN3/saliva family protein
LOC_Os12g07870OsAffx.19544.2.S1_at10/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870Os.11220.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_x_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07880Os.19541.1.S1_at11/1112+3985781..3993483dynamin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000302biological_processresponse to reactive oxygen species
GO:0009408biological_processresponse to heat
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0004601molecular_functionperoxidase activity
GO:0016688molecular_functionL-ascorbate peroxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18504.1.S1_at--897--9851Chr12:3960352..3960576 (25 bp)
TACACTGAAAATGGGCCTGGTGCTC
LOC_Os12g07830
Os.18504.1.S1_at--303--3191Chr12:3960319..3960343 (25 bp)
CAATCTTGGACATCTGAGTGGCTCA
LOC_Os12g07830
Os.18504.1.S1_at--420--6131Chr12:3960304..3960328 (25 bp)
GAGTGGCTCAAGTTTGACAACAGCT
LOC_Os12g07830
Os.18504.1.S1_at--331--191Chr12:3959814..3959838 (25 bp)
ATTTCACTTGAATAGCTGGCGTCAG
LOC_Os12g07830
Os.18504.1.S1_at--228--311Chr12:3959803..3959827 (25 bp)
ATAGCTGGCGTCAGCTGCCGATGAA
LOC_Os12g07830
Os.18504.1.S1_at--1030--6311Chr12:3959784..3959808 (25 bp)
GATGAACTGCATTTTGGCGAGTGAT
LOC_Os12g07830
Os.18504.1.S1_at--264--211Chr12:3959719..3959743 (25 bp)
ATATTCTGGTTTTACTACCCATCCA
LOC_Os12g07830
Os.18504.1.S1_at--993--51Chr12:3959655..3959679 (25 bp)
ATTGAGCTGTGTTACTGCTTGCCAT
LOC_Os12g07830
Os.18504.1.S1_at--45--4931Chr12:3959639..3959663 (25 bp)
GCTTGCCATCTTATCTATTGTACTA
LOC_Os12g07830
Os.18504.1.S1_at--470--5951Chr12:3959591..3959615 (25 bp)
GAGCAACCAAATTTGTTCAGGTCAA
LOC_Os12g07830
Os.18504.1.S1_at--690--9631Chr12:3959575..3959599 (25 bp)
TCAGGTCAACAATTAGATGCATCAC
LOC_Os12g07830
Target Sequence 
TACACTGAAAATGGGCCTGGTGCTCCTGGAGGGCAATCTTGGACATCTGAGTGGCTCAAGTTTGACAACAGCTACTTCAA
GGAAATCAAAGAACGCCGAGATGAGGATCTTCTAGTTCTCCCTACTGATGCTGTGCTCTTTGAGGACTCATCATTCAAGA
TCCATGCTGAAAAGTATGCTGAGGATCAGGATGCATTTTTCGAAGACTATGCTGAAGCTCATGCCAAACTGAGCAATCTT
GGGGCAAAGTTTGATCCTCCAAAGGGTATTTCACTTGAATAGCTGGCGTCAGCTGCCGATGAACTGCATTTTGGCGAGTG
ATAAACAAGATAATNCCTTGTTTGTTCTTGCTACTATAGAGCATATTCTGGTTTTACTACCCATCCAGAAATTTAACTTA
TTGTAAATGTGATGCTGGTGCTGTGTATTGAGCTGTGTTACTGCTTGCCATCTTATCTATTGTACTATATTATAAAGATA
GCTCGAAAAAGAGCAACCAAATTTGTTCAGGTCAACAATTAGATGCATCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis