Browse Element(s) Details


OsAffx.19544.2.S1_at

Description tigr:9640.m00718
TID=OsAffx.19544.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT000539 At4g00750F15P23_1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0787010/11dehydration-responsive protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07810Os.23454.1.A1_at10/1112+3946119..3954901aldehyde dehydrogenase family protein, expressed
LOC_Os12g07820Os.9266.1.S1_at11/1112+3954980..3958804L-ascorbate peroxidase 6, chloroplast precursor, putative, expressed
LOC_Os12g07830Os.18504.1.S1_at11/1112+3959511..3963000L-ascorbate peroxidase 5, chloroplast precursor, putative, expressed
LOC_Os12g07840OsAffx.19544.1.S1_at11/1112+3966437..3970100dehydration-responsive protein, putative
LOC_Os12g07840OsAffx.19544.1.S1_x_at11/1112+3966437..3970100dehydration-responsive protein, putative
LOC_Os12g07850NANA12+3972955..3975392hypothetical protein
LOC_Os12g07860OsAffx.29764.1.S1_x_at2/1112+3976137..3976930MtN3/saliva family protein
LOC_Os12g07870OsAffx.19544.2.S1_at10/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870Os.11220.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_x_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07880Os.19541.1.S1_at11/1112+3985781..3993483dynamin family protein, putative, expressed
LOC_Os12g07890OsAffx.19545.1.S1_at11/1112+3999138..4000451expressed protein
LOC_Os12g07900OsAffx.31638.1.S1_at11/1112+4003879..4009779hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19544.2.S1_at--788--2611Chr12:3978429..3978453 (25 bp)
AACCCGACGCGACTGTGAGGAGGGT
LOC_Os12g07870
OsAffx.19544.2.S1_at--1111--9151Chr12:3978467..3978487 (21 bp)
TGCCCTTCCCGGAAAGCTCCGAGAG
LOC_Os12g07870
OsAffx.19544.2.S1_at--375--2351NONE
AAAGCTCCGAGAGTGTAGTAGGCTG
NONE
OsAffx.19544.2.S1_at--1096--5271Chr12:3979324..3979348 (25 bp)
GAAGGTACGCCCTGCCGGACTCCGT
LOC_Os12g07870
OsAffx.19544.2.S1_at--849--1991Chr12:3979342..3979366 (25 bp)
ACTCCGTGGTTATGGGATGTGGCAC
LOC_Os12g07870
OsAffx.19544.2.S1_at--1065--8491Chr12:3979367..3979391 (25 bp)
TGGGGCCACGTCGTCAATAGCTCGT
LOC_Os12g07870
OsAffx.19544.2.S1_at--874--3091Chr12:3979382..3979406 (25 bp)
AATAGCTCGTACCTCGCTGGCGTCA
LOC_Os12g07870
OsAffx.19544.2.S1_at--279--5451Chr12:3979429..3979453 (25 bp)
GAACGTCATGGACAAGCTAGCCGTC
LOC_Os12g07870
OsAffx.19544.2.S1_at--976--831Chr12:3979436..3979460 (25 bp)
ATGGACAAGCTAGCCGTCTACGGCG
LOC_Os12g07870
OsAffx.19544.2.S1_at--659--2211Chr12:3979440..3979463 (24 bp)
ACAAGCTAGCCGTCTACGGCGGGTT
LOC_Os12g07870
OsAffx.19544.2.S1_at--566--8971Chr12:3979914..3979938 (25 bp)
TGAACGTGGTGTCGGTGGACTCGCC
LOC_Os12g07870
Target Sequence 
AACCCGACGCGACTGTGAGGAGGGTGAAGGTGCGGTGGTGCCCTTCCCGGAAAGCTCCGAGAGTGTAGTAGGCTGGAGGA
AGGTACGCCCTGCCGGACTCCGTGGTTATGGGATGTGGCACTGGGGCCACGTCGTCAATAGCTCGTACCTCGCTGGCGTC
AGCATCGACTGGAGCAACGTCAGGAACGTCATGGACAAGCTAGCCGTCTACGGCGGGTTCGCGGCAGCGTTGAAGGACAT
GAATGTGTGGGTGATGAACGTGGTGTCGGTGGACTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19544.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis