Browse Element(s) Details


OsAffx.19545.1.S1_at

Description tigr:9640.m00720
TID=OsAffx.19545.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0789011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07850NANA12+3972955..3975392hypothetical protein
LOC_Os12g07860OsAffx.29764.1.S1_x_at2/1112+3976137..3976930MtN3/saliva family protein
LOC_Os12g07870OsAffx.19544.2.S1_at10/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870Os.11220.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_x_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07870OsAffx.32053.1.S1_at1/1112+3978310..3980225dehydration-responsive protein, putative
LOC_Os12g07880Os.19541.1.S1_at11/1112+3985781..3993483dynamin family protein, putative, expressed
LOC_Os12g07890OsAffx.19545.1.S1_at11/1112+3999138..4000451expressed protein
LOC_Os12g07900OsAffx.31638.1.S1_at11/1112+4003879..4009779hypothetical protein
LOC_Os12g07910OsAffx.26950.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07910OsAffx.23260.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07910Os.55223.1.S1_at1/1112+4011272..4018455retrotransposon protein, putative, unclassified
LOC_Os12g07920OsAffx.19546.1.S1_at11/1112+4019192..4020396hypothetical protein
LOC_Os12g07930NANA12+4021672..4022509retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19545.1.S1_at--43--3351Chr12:3999879..3999903 (25 bp)
CACGGCGGCAAGGTCTATTGGGCTA
LOC_Os12g07890
OsAffx.19545.1.S1_at--433--7591Chr12:3999898..3999922 (25 bp)
GGGCTAGCTACAACATTGGCCTTAT
LOC_Os12g07890
OsAffx.19545.1.S1_at--816--7391Chr12:3999928..3999952 (25 bp)
GTGATGTCTTGGAATCTCTGCCCAA
LOC_Os12g07890
OsAffx.19545.1.S1_at--666--9491Chr12:3999944..3999968 (25 bp)
TCTGCCCAAGCTCCAATTGATCAAG
LOC_Os12g07890
OsAffx.19545.1.S1_at--272--8831Chr12:3999961..3999985 (25 bp)
TGATCAAGTTCCCTTTTCCTGAGAG
LOC_Os12g07890
OsAffx.19545.1.S1_at--4--4591Chr12:3999985..4000009 (25 bp)
GCGAAATTCAACTCTTGTTCCATGT
LOC_Os12g07890
OsAffx.19545.1.S1_at--909--10031Chr12:4000081..4000105 (25 bp)
TAGATGTTGACAAGTGCCGCTCCCG
LOC_Os12g07890
OsAffx.19545.1.S1_at--1155--3811Chr12:4000111..4000135 (25 bp)
CTGCCATCGTTATCAGGGCGTGGAC
LOC_Os12g07890
OsAffx.19545.1.S1_at--120--711Chr12:4000168..4000192 (25 bp)
ATGATGTGCTCGATGTCAACGGCCT
LOC_Os12g07890
OsAffx.19545.1.S1_at--1141--4771Chr12:4000289..4000313 (25 bp)
GCTGCGCCAACCTATATACCATGAG
LOC_Os12g07890
OsAffx.19545.1.S1_at--579--7551Chr12:4000342..4000366 (25 bp)
GGGCCAAGTCAGTTGTGTCGTGCAA
LOC_Os12g07890
Target Sequence 
CACGGCGGCAAGGTCTATTGGGCTAGCTACAACATTGGCCTTATCTTCTGTGATGTCTTGGAATCTCTGCCCAAGCTCCA
ATTGATCAAGTTCCCTTTTCCTGAGAGCGAAATTCAACTCTTGTTCCATGTTAAGACTGACAATTGTGGACCAACTGCGT
CCTTCAGGACAGTCGGTGTCTCTGATGGGAAGATCAAGTTCGTAGATGTTGACAAGTGCCGCTCCCGGCCCTCTGCCATC
GTTATCAGGGCGTGGACACTGCAAATGCCACAGATGGTATGGAAGTTGGATGATGTGCTCGATGTCAACGGCCTGTGGGG
GTCAGCATCCTTCAAGAAATACGGTTTGCATCAGTGGGTACCAGAGTATCCTGTGGTGAGCTTACTAGACCCACACATTG
TGCACTTTGTGCTGCGCCAACCTATATACCATGAGCAGGTCTGGATGATCACAGTTGACATGAGGGCCAAGTCAGTTGTG
TCGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis