Browse Element(s) Details


OsAffx.23260.1.S1_at

Description gb:NM_187941.1
DB_XREF= gi:34902965
TID=OsAffx.23260.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1550011/11hypothetical protein
LOC_Os12g079101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15480Os.501.1.S1_at11/111+8688631..8696430protein kinase, putative, expressed
LOC_Os01g15490Os.10320.1.S1_x_at11/111+8697966..8705373phosphoadenosine phosphosulfate, putative, expressed
LOC_Os01g15500OsAffx.23260.1.S1_at11/111+8710942..8711923hypothetical protein
LOC_Os01g15510OsAffx.10015.1.S1_s_at11/111+8712257..8713650hypothetical protein
LOC_Os01g15520Os.46094.1.S1_at6/111+8714655..8717700hypothetical protein
LOC_Os01g15530Os.30699.1.S1_at11/111+8729229..8731288pentatricopeptide, putative, expressed
LOC_Os01g15540Os.24965.1.S1_at4/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15540Os.12733.3.S1_x_at1/111+8732786..8737361Kinesin motor domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23260.1.S1_at--1076--5331Chr01:8710944..8711277 (25 bp)
GAAGATGACATAGTTGCGAAAAAAC
LOC_Os01g15500
OsAffx.23260.1.S1_at--776--4531Chr01:8711268..8711292 (25 bp)
GCGAAAAAACGTTCTATGGGCCCTG
LOC_Os01g15500
OsAffx.23260.1.S1_at--1128--10532Chr01:8711279..8711303 (25 bp)
TTCTATGGGCCCTGACCCATTACCA
LOC_Os01g15500
OsAffx.23260.1.S1_at--438--5571Chr01:8711292..8711316 (25 bp)
GACCCATTACCACACCTACGTGGAA
LOC_Os01g15500
OsAffx.23260.1.S1_at--1018--3291Chr01:8711302..8711326 (25 bp)
CACACCTACGTGGAAAAAGTATATC
LOC_Os01g15500
OsAffx.23260.1.S1_at--360--2813Chr12:4016592..4016671 (25 bp)
AAGTATATCAAAGGTCCCTCAACTT
LOC_Os12g07910
OsAffx.23260.1.S1_at--851--8731Chr01:8711647..8711671 (25 bp)
TGTCACCGACGGTGGGCTCCTACAG
LOC_Os01g15500
OsAffx.23260.1.S1_at--95--1931Chr01:8711655..8711679 (25 bp)
ACGGTGGGCTCCTACAGCATCGCCA
LOC_Os01g15500
OsAffx.23260.1.S1_at--981--3531Chr01:8711672..8711696 (25 bp)
CATCGCCAGCCGCACGTGAGGATAC
LOC_Os01g15500
OsAffx.23260.1.S1_at--775--4511Chr01:8711680..8711704 (25 bp)
GCCGCACGTGAGGATACCTTCGGAG
LOC_Os01g15500
OsAffx.23260.1.S1_at--399--7211Chr01:8711783..8711807 (25 bp)
GTCGTCTCGCCGCACAAGGTTGTCG
LOC_Os01g15500
Target Sequence 
GAAGATGACATAGTTGCGAAAAAACGTTCTATGGGCCCTGACCCATTACCACACCTACGTGGAAAAAGTATATCAAAGGT
CCCTCAACTTGTCATCGGGATAAAAAACGTCCTCGAACCGCAAAACAGATATGCGGGGTCCCTTAACTGTACAAAACCGG
TCACCCGAGGTTCTTCGGTGGTTTTGACTCCGGTTTTGGTCTACGTGACGGCTGAGTCANNGNNGANNNCANGCCATGTC
AAGCGCCGCGGCCACCACCACGGCGACCTGCGGCAGCAAGGGGCAGGCGCAGCGGAGCGGGACGGTGAGGTTGTCACCGA
CGGTGGGCTCCTACAGCATCGCCAGCCGCACGTGAGGATACCTTCGGAGGCGGCGGCGACGGTGAGGAGGAGGGGGAGGT
GGGCGACGCAGTCCTCCGTCGGCGGCGAGGATGGGGACGCCGCCATGGTCGTCTCGCCGCACAAGGTTGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis