Browse Element(s) Details


Os.24965.1.S1_at

Description gb:AK070313.1
DB_XREF= gi:32980337
TID=Os.24965.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049J12, full insert sequence.
FL= gb:AK070313.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g155404/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15500OsAffx.23260.1.S1_at11/111+8710942..8711923hypothetical protein
LOC_Os01g15510OsAffx.10015.1.S1_s_at11/111+8712257..8713650hypothetical protein
LOC_Os01g15520Os.46094.1.S1_at6/111+8714655..8717700hypothetical protein
LOC_Os01g15530Os.30699.1.S1_at11/111+8729229..8731288pentatricopeptide, putative, expressed
LOC_Os01g15540Os.24965.1.S1_at4/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15540Os.12733.3.S1_x_at1/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15550OsAffx.23261.1.S1_at11/111+8742675..8743526hypothetical protein
LOC_Os01g15560OsAffx.23262.1.S1_at9/111+8744855..8745280hypothetical protein
LOC_Os01g15570NANA1+8745907..8746146hypothetical protein
LOC_Os01g15580Os.20316.1.S1_at11/111+8747955..8752249NB-ARC domain containing protein, expressed
LOC_Os01g15590OsAffx.11064.1.S1_at11/111+8754316..8754783hypothetical protein
LOC_Os01g15600Os.1173.1.S1_at11/111+8756172..8760291Purine-rich single-stranded DNA-binding protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24965.1.S1_at--545--2371Chr01:8732918..8732942 (25 bp)
AAACGAACATCCTGTGTACCATGGG
LOC_Os01g15540
Os.24965.1.S1_at--465--9271Chr01:8732909..8732933 (25 bp)
TCCTGTGTACCATGGGAGACCCAGA
LOC_Os01g15540
Os.24965.1.S1_at--573--1811Chr01:8732891..8732915 (25 bp)
ACCCAGAAGGTCACTACAGGAAGAA
LOC_Os01g15540
Os.24965.1.S1_at--354--2271Chr01:8732827..8732851 (25 bp)
AAATCTCACAGGTCACATGATGATA
LOC_Os01g15540
Os.24965.1.S1_at--447--2491Chr01:8731879..8731903 (25 bp)
AACAGCATGGATTGGTGCTCTTCTA
NONE
Os.24965.1.S1_at--857--9071Chr01:8731864..8731888 (25 bp)
TGCTCTTCTAGCACTGGGAACTGTA
NONE
Os.24965.1.S1_at--1126--10431Chr01:8731830..8731854 (25 bp)
TTAGAGCATGGCTTCTTTCAGAGTT
NONE
Os.24965.1.S1_at--967--6031Chr01:8731810..8731834 (25 bp)
GAGTTTGACACTCTAAAGTACCTAG
NONE
Os.24965.1.S1_at--232--3491Chr01:8731737..8731761 (25 bp)
CAGGAAGTAATGCTCTCGGTGTATA
NONE
Os.24965.1.S1_at--209--271Chr01:8731689..8731713 (25 bp)
ATATGTCCAGCCAGTACCACAATTG
NONE
Os.24965.1.S1_at--63--1051Chr01:8731663..8731687 (25 bp)
AGGTGAACTGTTGATTGATGCTAAA
NONE
Target Sequence 
AAACGAACATCCTGTGTACCATGGGAGACCCAGAAGGTCACTACAGGAAGAACTGGAAAATTGNACGCTAGAGAAGCCAA
ACATGGACTCAAAATCTCACAGGTCACATGATGATAAACACAAAACAGGNAANNTNNNNNNNTNCNNNNNAGNNNNNCAA
ACAGCATGGATTGGTGCTCTTCTAGCACTGGGAACTGTAAGCATTGGATTAGAGCATGGCTTCTTTCAGAGTTTGACACT
CTAAAGTACCTAGAATCTCATCACTTTGAGATATAGTATTGAATTTTAAGAGAAACTACTACAGGAAGTAATGCTCTCGG
TGTATATTGTACCNCGAGCACNCAATGAAATATGTCCAGCCAGTACCACAATTGCAGGTGAACTGTTGATTGATGCTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis