Browse Element(s) Details


OsAffx.11064.1.S1_at

Description tigr:9629.m01546
TID=OsAffx.11064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1559011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15530Os.30699.1.S1_at11/111+8729229..8731288pentatricopeptide, putative, expressed
LOC_Os01g15540Os.24965.1.S1_at4/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15540Os.12733.3.S1_x_at1/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15550OsAffx.23261.1.S1_at11/111+8742675..8743526hypothetical protein
LOC_Os01g15560OsAffx.23262.1.S1_at9/111+8744855..8745280hypothetical protein
LOC_Os01g15570NANA1+8745907..8746146hypothetical protein
LOC_Os01g15580Os.20316.1.S1_at11/111+8747955..8752249NB-ARC domain containing protein, expressed
LOC_Os01g15590OsAffx.11064.1.S1_at11/111+8754316..8754783hypothetical protein
LOC_Os01g15600Os.1173.1.S1_at11/111+8756172..8760291Purine-rich single-stranded DNA-binding protein, putative, expressed
LOC_Os01g15610Os.116.1.S1_at4/111+8767676..8770069hypothetical protein
LOC_Os01g15620OsAffx.22940.2.S1_s_at10/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.3.S1_x_at9/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.2.S1_at8/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.1.S1_s_at6/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.3.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.18.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.5.S1_x_at3/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.31552.2.S1_at1/111+8772401..8777417transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11064.1.S1_at--140--3991Chr01:8754407..8754431 (25 bp)
CGGGCAAAGAGGACCGATGGCCAAT
LOC_Os01g15590
OsAffx.11064.1.S1_at--367--1791Chr01:8754419..8754443 (25 bp)
ACCGATGGCCAATGGAGGCGCACGC
LOC_Os01g15590
OsAffx.11064.1.S1_at--328--4971Chr01:8754458..8754482 (25 bp)
GCATCGGCCAGCGAAGGTGCGAGGT
LOC_Os01g15590
OsAffx.11064.1.S1_at--283--9371Chr01:8754544..8754568 (25 bp)
TCGACGGGAGGCACAACTGTGACTG
LOC_Os01g15590
OsAffx.11064.1.S1_at--374--2211Chr01:8754556..8754580 (25 bp)
ACAACTGTGACTGGGTGGCGCGGCC
LOC_Os01g15590
OsAffx.11064.1.S1_at--644--4231Chr01:8754579..8754603 (25 bp)
CCGACGCGAAGAGGTGCTGCGCATA
LOC_Os01g15590
OsAffx.11064.1.S1_at--426--9091Chr01:8754593..8754617 (25 bp)
TGCTGCGCATAGTTGGCCCCAGCGG
LOC_Os01g15590
OsAffx.11064.1.S1_at--109--8371Chr01:8754643..8754667 (25 bp)
GGCGGGAGCTGCAGTCGGGTGGGAT
LOC_Os01g15590
OsAffx.11064.1.S1_at--929--9411Chr01:8754657..8754681 (25 bp)
TCGGGTGGGATGTGCGGCCGACAAA
LOC_Os01g15590
OsAffx.11064.1.S1_at--1014--7271Chr01:8754718..8754742 (25 bp)
GTGCGAGGTGCGGTCAGTAGCGAAG
LOC_Os01g15590
OsAffx.11064.1.S1_at--1056--7811Chr01:8754729..8754753 (25 bp)
GGTCAGTAGCGAAGGTCGGCACGAC
LOC_Os01g15590
Target Sequence 
CGGGCAAAGAGGACCGATGGCCAATGGAGGCGCACGCGAGGAGGCGTGTCGGCATCGGCCAGCGAAGGTGCGAGGTGGCT
AGTGGAGGAGGTGGCCGTGGCGGACCTCGTGGCGGACCTCGTGGCGGCGGTGGCTGGTCGACGGGAGGCACAACTGTGAC
TGGGTGGCGCGGCCGACGCGAAGAGGTGCTGCGCATAGTTGGCCCCAGCGGCAGCGGCAGAGCTCGCGACAACGACGGCG
GGAGCTGCAGTCGGGTGGGATGTGCGGCCGACAAAGGCGAGGAGGCGCGGCCGGCAGCAAAGGTCGGCGCGGTGCGAGGT
GCGGTCAGTAGCGAAGGTCGGCACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis