Browse Element(s) Details


OsAffx.23262.1.S1_at

Description tigr:9629.m01543
TID=OsAffx.23262.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g155609/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15530Os.30699.1.S1_at11/111+8729229..8731288pentatricopeptide, putative, expressed
LOC_Os01g15540Os.24965.1.S1_at4/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15540Os.12733.3.S1_x_at1/111+8732786..8737361Kinesin motor domain containing protein, expressed
LOC_Os01g15550OsAffx.23261.1.S1_at11/111+8742675..8743526hypothetical protein
LOC_Os01g15560OsAffx.23262.1.S1_at9/111+8744855..8745280hypothetical protein
LOC_Os01g15570NANA1+8745907..8746146hypothetical protein
LOC_Os01g15580Os.20316.1.S1_at11/111+8747955..8752249NB-ARC domain containing protein, expressed
LOC_Os01g15590OsAffx.11064.1.S1_at11/111+8754316..8754783hypothetical protein
LOC_Os01g15600Os.1173.1.S1_at11/111+8756172..8760291Purine-rich single-stranded DNA-binding protein, putative, expressed
LOC_Os01g15610Os.116.1.S1_at4/111+8767676..8770069hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23262.1.S1_at--1041--9171Chr01:8744799..8744823 (25 bp)
TGCCTATGATGCCAACCAAGTGCTC
NONE
OsAffx.23262.1.S1_at--504--9371Chr01:8744822..8744846 (25 bp)
TCGACGGCAAGCTTCAATGATGGTT
NONE
OsAffx.23262.1.S1_at--340--9931Chr01:8744896..8744920 (25 bp)
TACGGTCACCTTGGAGCTGGGATAT
LOC_Os01g15560
OsAffx.23262.1.S1_at--304--9051Chr01:8744945..8744969 (25 bp)
TGCATCGATACCACGGACTGTTCCA
LOC_Os01g15560
OsAffx.23262.1.S1_at--462--8111Chr01:8744959..8744983 (25 bp)
GGACTGTTCCAAAGAGACGCACGCC
LOC_Os01g15560
OsAffx.23262.1.S1_at--697--6231Chr01:8744992..8745016 (25 bp)
GATGGCTGCACTCAACGTCAATGGT
LOC_Os01g15560
OsAffx.23262.1.S1_at--1074--2631Chr01:8745023..8745047 (25 bp)
AACCAAGCTGTGGTCGCGTTCCTGA
LOC_Os01g15560
OsAffx.23262.1.S1_at--864--6691Chr01:8745040..8745064 (25 bp)
GTTCCTGACCATGACGGACATGTTT
LOC_Os01g15560
OsAffx.23262.1.S1_at--325--8931Chr01:8745085..8745109 (25 bp)
TGAGCCAATGGACATCTTCTCAGCA
LOC_Os01g15560
OsAffx.23262.1.S1_at--663--5171Chr01:8745107..8745131 (25 bp)
GCAAGATCGACCATTGACCACAAGG
LOC_Os01g15560
OsAffx.23262.1.S1_at--231--1471Chr01:8745158..8745182 (25 bp)
AGAATGGGCTCGCAGAATGCCTCTT
LOC_Os01g15560
Target Sequence 
TGCCTATGATGCCAACCAAGTGCTCGACGGCAAGCTTCAATGATGGTTGTGCACGCATGGCAGCGAGCTCAAGCCACACC
AATAAGGTACCTATTCCTACGGTCACCTTGGAGCTGGGATATGGTGAGGACAAGGCCCACACACCCTGCATCGATACCAC
GGACTGTTCCAAAGAGACGCACGCCAAGTGTTTGATGGCTGCACTCAACGTCAATGGTGGCAGCAACCAAGCTGTGGTCG
CGTTCCTGACCATGACGGACATGTTTAAGATCATTCCAACATATGTTGAGCCAATGGACATCTTCTCAGCAAGATCGACC
ATTGACCACAAGGAAAACATACCAATGCCACATCGACGAAGAATGGGCTCGCAGAATGCCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23262.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis