Browse Element(s) Details


Os.116.1.S1_at

Description gb:AK071445.1
DB_XREF= gi:32981468
TID=Os.116.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.116 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023096E14, full insert sequence.
FL= gb:AK071445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g156104/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15550OsAffx.23261.1.S1_at11/111+8742675..8743526hypothetical protein
LOC_Os01g15560OsAffx.23262.1.S1_at9/111+8744855..8745280hypothetical protein
LOC_Os01g15570NANA1+8745907..8746146hypothetical protein
LOC_Os01g15580Os.20316.1.S1_at11/111+8747955..8752249NB-ARC domain containing protein, expressed
LOC_Os01g15590OsAffx.11064.1.S1_at11/111+8754316..8754783hypothetical protein
LOC_Os01g15600Os.1173.1.S1_at11/111+8756172..8760291Purine-rich single-stranded DNA-binding protein, putative, expressed
LOC_Os01g15610Os.116.1.S1_at4/111+8767676..8770069hypothetical protein
LOC_Os01g15620OsAffx.22940.2.S1_s_at10/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.3.S1_x_at9/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.2.S1_at8/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.1.S1_s_at6/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.3.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.18.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.5.S1_x_at3/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.31552.2.S1_at1/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15630Os.117.2.S1_x_at11/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15630Os.117.1.S1_at10/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15640Os.4387.1.S1_at10/111+8789456..8794160No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.116.1.S1_at--1120--1031Chr01:8767647..8767671 (25 bp)
AGGTGACCTTGCTCTCTGGTGGCCA
NONE
Os.116.1.S1_at--322--3351Chr01:8767670..8767694 (25 bp)
CACGCCATGGGAGCCGTCAAGAGGT
NONE
Os.116.1.S1_at--584--2791Chr01:8767688..8767712 (25 bp)
AAGAGGTCTAGCTTTCTCCTCGTCG
LOC_Os01g15610
Os.116.1.S1_at--1140--5571Chr01:8769953..8769977 (25 bp)
GAAATGCTGGCGATGGTCCACGAGA
LOC_Os01g15610
Os.116.1.S1_at--504--8491Chr01:8769993..8770017 (25 bp)
TGAAGACGAACGACTACGGGACCTA
LOC_Os01g15610
Os.116.1.S1_at--324--831Chr01:8770034..8770058 (25 bp)
ATGGCTAAGCCTCACGCCAAGGAAA
LOC_Os01g15610
Os.116.1.S1_at--89--3531Chr01:8770087..8770111 (25 bp)
CATGCATGCATCTCATATCCATAAT
NONE
Os.116.1.S1_at--653--7811Chr01:8770162..8770186 (25 bp)
GGTCATTAAATTGCCTCTTCATCGA
NONE
Os.116.1.S1_at--76--2071Chr01:8770217..8770241 (25 bp)
ACATATAATATACTACTTTGGGCCG
NONE
Os.116.1.S1_at--94--3691Chr01:8770232..8770256 (25 bp)
CTTTGGGCCGGCCATATATATACAT
NONE
Os.116.1.S1_at--156--6911Chr01:8770311..8770335 (25 bp)
GTATCTCATTAGTTGTACGTACATG
NONE
Target Sequence 
AGGTGACCTTGCTCTCTGGTGGCCACGCCATGGGAGCCGTCAAGAGGTCTAGCTTTCTCCTCGTCGTCGTCGTCTTCGCT
TTGCTCCTCCTGACCTCCATGGCAGCAGGAGGGAGGAAGATGTTGATCAACAAGCATCAAGTGCAATCAATGGAGACGTC
TGATGATGAATCCATGCATCAAGGGCAGGAAGACGACGAAATGCTGGCGATGGTCCACGAGAGAATTCTGAGGCAGGTGA
AGACGAACGACTACGGGACCTACGACCCTACCCCAACCATGGCTAAGCCTCACGCCAAGGAAATACCTAACTAACTATAT
ATATATAGCTGCATGCATGCATCTCATATCCATAATCCATGCATGCAAATATGTGATCAATATATATGTCTTGCATATAT
ATATGTGGTCATTAAATTGCCTCTTCATCGAGATATATTTCGATATGTTAATTAGTTTGCTACATATAATATACTACTTT
GGGCCGGCCATATATATACATATGTTTTGTCGAATAAACTTCATGGTTTGTCATGGAATGTTATTATTCATATGTGTATC
TCATTAGTTGTACGTACATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.116.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis