Browse Element(s) Details


Os.117.1.S1_at

Description gb:AK102361.1
DB_XREF= gi:32987570
TID=Os.117.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091I10, full insert sequence.
FL= gb:AK102361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1563010/11C3H2C3 RING-finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15600Os.1173.1.S1_at11/111+8756172..8760291Purine-rich single-stranded DNA-binding protein, putative, expressed
LOC_Os01g15610Os.116.1.S1_at4/111+8767676..8770069hypothetical protein
LOC_Os01g15620OsAffx.22940.2.S1_s_at10/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.3.S1_x_at9/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.2.S1_at8/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.1.S1_s_at6/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.3.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.18.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.5.S1_x_at3/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.31552.2.S1_at1/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15630Os.117.2.S1_x_at11/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15630Os.117.1.S1_at10/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15640Os.4387.1.S1_at10/111+8789456..8794160No apical meristem protein, expressed
LOC_Os01g15650NANA1+8802509..8805319transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g15660Os.27385.2.S1_x_at11/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.27385.3.S1_at9/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.45507.1.S1_at1/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15669OsAffx.11065.1.S1_x_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15669OsAffx.11065.1.S1_at11/111+8813692..8815120Transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.117.1.S1_at--429--351Chr01:8788420..8788441 (22 bp)
ATAACTGCCAGTCATCATCGAGAAA
LOC_Os01g15630
Os.117.1.S1_at--1081--6831Chr01:8788729..8788753 (25 bp)
GTTTCTCCTAGCCATAGTCATATTC
LOC_Os01g15630
Os.117.1.S1_at--369--231Chr01:8788748..8788772 (25 bp)
ATATTCGGCCGCAAGCACTTGTCGT
LOC_Os01g15630
Os.117.1.S1_at--852--3151Chr01:8788763..8788787 (25 bp)
CACTTGTCGTGCTGGAAAGGGTCTC
LOC_Os01g15630
Os.117.1.S1_at--60--6151Chr01:8788827..8788851 (25 bp)
GAGGTTTATTTCAGAGCCCAGTCGC
LOC_Os01g15630
Os.117.1.S1_at--5--10531Chr01:8788836..8788860 (25 bp)
TTCAGAGCCCAGTCGCAGTTTAGTA
LOC_Os01g15630
Os.117.1.S1_at--116--6311Chr01:8788885..8788909 (25 bp)
GATGATGGCCTTCAGAGTTGAGACC
LOC_Os01g15630
Os.117.1.S1_at--460--3571Chr01:8789029..8789053 (25 bp)
CATATAGTTTGGGAACTTGCGTACA
LOC_Os01g15630
Os.117.1.S1_at--829--671Chr01:8789096..8789115 (20 bp)
ATGACACGCATCACAGAAGGCATGT
LOC_Os01g15630
Os.117.1.S1_at--315--7071Chr01:8789125..8789149 (25 bp)
GTAATGTTGTTTGTCATCTTCGCAG
LOC_Os01g15630
Os.117.1.S1_at--682--7111NONE
GTCATCTTCGCAGACGTGGTAGTAT
NONE
Target Sequence 
ATAACTGCCAGTCATCATCGAGAAATCCCTCTTGAAGAGGAGCTGTACTCCCAAGCGAGAGCAAGCATGCGGGAGNCTGA
AGTCAAGCCGAATCGGTGCAAATGATATGACATGGCTGTTGAACGACCTCCGCATTGAAGGTTTCTCCTAGCCATAGTCA
TATTCGGCCGCAAGCACTTGTCGTGCTGGAAAGGGTCTCGATAGTAGAATAACAGTTGATATAGTATACTATGCAACTGA
GGTTTATTTCAGAGCCCAGTCGCAGTTTAGTAGCGAGTAATCTAACAGAAAAAGGGGATGATGGCCTTCAGAGTTGAGAC
CGAAGGTCCATTGCTGTGTTGCAAGGTTATATATAATCCAGCGTCCCAGCAATCTNAGTTACTATGTTTTGTGGTTTTGT
ATTATTGGTTATGTGCCCCCTTTATTTTATGGTTGCAAATTCATATAGTTTGGGAACTTGCGTACATANNNGGAATCTTA
ACTCGGGAGATGCTATTTATNCATGACACGCATCACAGAAGGCATGTAACGGTTATGTAATGTTGTTTGTCATCTTCGCA
GACGTGGTAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis