Browse Element(s) Details


Os.4387.1.S1_at

Description gb:AB028187.1
DB_XREF= gi:6730945
GEN=OsNAC8
TID=Os.4387.1
CNT=29
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4387 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for OsNAC8 protein, complete cds.
PROD=OsNAC8 protein
FL= gb:AK102808.1 gb:AK062259.1 gb:AB028187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1564010/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15610Os.116.1.S1_at4/111+8767676..8770069hypothetical protein
LOC_Os01g15620OsAffx.22940.2.S1_s_at10/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.3.S1_x_at9/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.2.S1_at8/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.1.S1_s_at6/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.3.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.18.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.5.S1_x_at3/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.31552.2.S1_at1/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15630Os.117.2.S1_x_at11/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15630Os.117.1.S1_at10/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15640Os.4387.1.S1_at10/111+8789456..8794160No apical meristem protein, expressed
LOC_Os01g15650NANA1+8802509..8805319transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g15660Os.27385.2.S1_x_at11/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.27385.3.S1_at9/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.45507.1.S1_at1/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15669OsAffx.11065.1.S1_x_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15669OsAffx.11065.1.S1_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15680Os.53832.1.S1_at10/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_at3/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.11065.1.S1_x_at2/111+8817938..8819411expressed protein
LOC_Os01g15680OsAffx.27865.1.S1_x_at1/111+8817938..8819411expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
GO:0003713molecular_functiontranscription coactivator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4387.1.S1_at--54--751Chr01:8789920..8789944 (25 bp)
ATGTAGCTTCTACCAAGCGGTCAGA
LOC_Os01g15640
Os.4387.1.S1_at--480--211Chr01:8789832..8789856 (25 bp)
ATTTGCAGGCTGTTCGGATGCTCGA
LOC_Os01g15640
Os.4387.1.S1_at--931--3511Chr01:8789802..8789826 (25 bp)
CATGATACTTGTTGCGGGTTTCGCT
LOC_Os01g15640
Os.4387.1.S1_at--923--10291Chr01:8789784..8789808 (25 bp)
TTTCGCTATTGGAGTCGCTGTGGTA
LOC_Os01g15640
Os.4387.1.S1_at--720--1271Chr01:8789721..8789745 (25 bp)
AGATCAGCAGCATACCTAGCCTTTA
LOC_Os01g15640
Os.4387.1.S1_at--559--6751Chr01:8789687..8789711 (25 bp)
GTTACTGGGTTTCTATGCTTTTTGC
LOC_Os01g15640
Os.4387.1.S1_at--306--2551Chr01:8789642..8789666 (25 bp)
AACTCCGATCTTTGGTTGGTGCAGA
LOC_Os01g15640
Os.4387.1.S1_at--556--5491Chr01:8789619..8789643 (25 bp)
GAACATTTGATGTATGCGCCGTTTT
LOC_Os01g15640
Os.4387.1.S1_at--182--10231Chr01:8789558..8789582 (25 bp)
TTTGGTCGACTTTTGTTCTCGCCAG
LOC_Os01g15640
Os.4387.1.S1_at--1087--6711Chr01:8789544..8789568 (25 bp)
GTTCTCGCCAGCTAGTAGTACTATG
LOC_Os01g15640
Os.4387.1.S1_at--22--3151NONE
AATTAACCGCTTGCATTGTACTAAA
NONE
Target Sequence 
ATGTAGCTTCTACCAAGCGGTCAGACGCAGGGAAGCCAAGTACAGAGCTCAGCAGCAATCGAGGATTTCTCAGGGGTATC
CGAAATGCATTTGCAGGCTGTTCGGATGCTCGATGGAACATGATACTTGTTGCGGGTTTCGCTATTGGAGTCGCTGTGGT
AGCGCTTCATATAGGCCAACGCCTTGGATTAAGCCAGAGAGATCAGCAGCATACCTAGCCTTTAGGTTTGCAGGTTACTG
GGTTTCTATGCTTTTTGCAATCTGGAGAAACGTAAACNAACTCCGATCTTTGGTTGGTGCAGAACATTTGATGTATGCGC
CGTTTTTTTTGTGTTGGTTTTGTACATATTATTATCTTCGNTTTTGGTCGACTTTTGTTCTCGCCAGCTAGTAGTACTAT
GTTGACGAATGTAGAAGAAAACCTCAAAAAAAAAAGAACAAATGAAAAAAAATTGACGATGAAAATTTATATAATTAACC
GCTTGCATTGTACTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis