Browse Element(s) Details


Os.117.2.S1_x_at

Description gb:NM_187954.1
DB_XREF= gi:34902991
TID=Os.117.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1563011/11C3H2C3 RING-finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g15600Os.1173.1.S1_at11/111+8756172..8760291Purine-rich single-stranded DNA-binding protein, putative, expressed
LOC_Os01g15610Os.116.1.S1_at4/111+8767676..8770069hypothetical protein
LOC_Os01g15620OsAffx.22940.2.S1_s_at10/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.3.S1_x_at9/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.2.S1_at8/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.1.S1_s_at6/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.3.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620Os.35344.18.S1_x_at4/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.22940.5.S1_x_at3/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15620OsAffx.31552.2.S1_at1/111+8772401..8777417transposon protein, putative, Mutator sub-class
LOC_Os01g15630Os.117.2.S1_x_at11/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15630Os.117.1.S1_at10/111+8783417..8789180C3H2C3 RING-finger protein, putative, expressed
LOC_Os01g15640Os.4387.1.S1_at10/111+8789456..8794160No apical meristem protein, expressed
LOC_Os01g15650NANA1+8802509..8805319transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g15660Os.27385.2.S1_x_at11/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.27385.3.S1_at9/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15660Os.45507.1.S1_at1/111+8806191..8809898NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g15669OsAffx.11065.1.S1_x_at11/111+8813692..8815120Transferase family protein
LOC_Os01g15669OsAffx.11065.1.S1_at11/111+8813692..8815120Transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.117.2.S1_x_at--340--5031Chr01:8787789..8787813 (25 bp)
GCAGTAGGATCACATGGCGAGTCAT
LOC_Os01g15630
Os.117.2.S1_x_at--797--6091Chr01:8787807..8787831 (25 bp)
GAGTCATCTGATGGTTGGTCAATGC
LOC_Os01g15630
Os.117.2.S1_x_at--43--5591Chr01:8787843..8787867 (25 bp)
GAAATGGTCGCATCATCTCAGAGAG
LOC_Os01g15630
Os.117.2.S1_x_at--1080--1111Chr01:8787885..8787909 (25 bp)
AGTGAGCTCTTAGGTTCTGTTTCGA
LOC_Os01g15630
Os.117.2.S1_x_at--994--351Chr01:8787937..8787961 (25 bp)
ATAATCCTACTACACATTCACCTGA
LOC_Os01g15630
Os.117.2.S1_x_at--118--8171Chr01:8787998..8788022 (25 bp)
GGAACGGTCCACATGGAATGCTCAG
LOC_Os01g15630
Os.117.2.S1_x_at--230--5471Chr01:8788023..8788047 (25 bp)
GAACTGGCTGTTGTTGCTGTTTTAT
LOC_Os01g15630
Os.117.2.S1_x_at--1095--4731Chr01:8788038..8788062 (25 bp)
GCTGTTTTATTGTGCGGCCATGTTT
LOC_Os01g15630
Os.117.2.S1_x_at--1006--8431Chr01:8788053..8788077 (25 bp)
GGCCATGTTTACCATGCTGACTGTT
LOC_Os01g15630
Os.117.2.S1_x_at--730--10811Chr01:8788118..8788142 (25 bp)
TTGTCCTGTATGCACCCATGGTGAG
LOC_Os01g15630
Os.117.2.S1_x_at--950--5891Chr01:8788629..8788653 (25 bp)
GAGCTGTACTCCCAAGCGAGAGCAA
LOC_Os01g15630
Target Sequence 
GCAGTAGGATCACATGGCGAGTCATCTGATGGTTGGTCAATGCGAACATTTTCTGAAATGGTCGCATCATCTCAGAGAGA
GAGATGGTCAGTTGATAGTGAGCTCTTAGGTTCTGTTTCGAGTAAAATGACAAGATCAAATGCTTCTAATAATCCTACTA
CACATTCACCTGACCAAGAGGTGTGCAAGCTATGTTTAAAGCTATTAAAGGAACGGTCCACATGGAATGCTCAGGAACTG
GCTGTTGTTGCTGTTTTATTGTGCGGCCATGTTTACCATGCTGACTGTTTGGATAGCTTAACTGCAGAAGCTGACAAATA
TGATCCCCCTTGTCCTGTATGCACCCATGGTGAGAAATGTACAGTGAAGCTATTTGGGAAGTTGGAATCAAAGACAAAGA
ACAAGATACCTAAAAATGTGATAGTTGATGTTAATCTAGATGGGAGCTCTAAGCATCAGAAGGAAAAAATCCCTCTTGAA
GAGGAGCTGTACTCCCAAGCGAGAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.117.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis