Browse Element(s) Details


Os.46094.1.S1_at

Description gb:NM_188940.1
DB_XREF= gi:34904963
GEN=OSJNBa0077M12.25
TID=Os.46094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077M12.25 (OSJNBa0077M12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0077M12.25 (OSJNBa0077M12.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3269011/11expressed protein
LOC_Os01g155206/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein
LOC_Os08g32690Os.46094.1.S1_at11/118+20115832..20121716expressed protein
LOC_Os08g32690Os.21840.1.A1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.1216.1.S1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.23497.1.A1_at1/118+20115832..20121716expressed protein
LOC_Os08g32700OsAffx.29478.1.S1_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32700OsAffx.29478.1.S1_x_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32710OsAffx.22011.1.S1_at11/118+20127932..20128253hypothetical protein
LOC_Os08g32720Os.55341.1.S1_x_at1/118+20131104..20131532hypothetical protein
LOC_Os08g32730Os.40855.2.S1_x_at11/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_at9/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_x_at7/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.5.S1_x_at3/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_x_at2/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_at1/118+20136880..20140664hypothetical protein
LOC_Os08g32740OsAffx.17302.2.S1_at9/118+20146456..20147956hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46094.1.S1_at--758--3092Chr01:8715625..8715646 (22 bp)
AATACAGTGGCCTCTAAATCAGTTA
LOC_Os01g15520
Os.46094.1.S1_at--440--171Chr08:20118821..20118845 (25 bp)
ATTTTCATGGTCAAGAGGTTACTCT
LOC_Os08g32690
Os.46094.1.S1_at--888--6772Chr01:8715764..8715787 (24 bp)
GTTACTCTTAAGTTGCACCGTGATG
LOC_Os01g15520
Os.46094.1.S1_at--600--431Chr08:20118095..20118119 (25 bp)
ATCTTGTTAGCTTTGCTGCTCAGCA
LOC_Os08g32690
Os.46094.1.S1_at--151--5172Chr01:8716468..8716492 (25 bp)
GCAACCAGATGCAACTGTTTTCCTT
LOC_Os01g15520
Os.46094.1.S1_at--882--8752Chr01:8716483..8716507 (25 bp)
TGTTTTCCTTCCATCCGGACCAGAA
LOC_Os01g15520
Os.46094.1.S1_at--875--52Chr01:8716779..8716803 (25 bp)
ATTGCACGTCGAGTTAGCTTAGTTC
LOC_Os01g15520
Os.46094.1.S1_at--644--10052Chr01:8716798..8716822 (25 bp)
TAGTTCGTTATCCTGACCCTGAAGA
LOC_Os01g15520
Os.46094.1.S1_at--562--5371Chr08:20116631..20116655 (25 bp)
GAAGACGAGGTCTCGGTTCTCTAGC
LOC_Os08g32690
Os.46094.1.S1_at--1032--3771Chr08:20116620..20116644 (25 bp)
CTCGGTTCTCTAGCGGGTCGAAGAA
LOC_Os08g32690
Os.46094.1.S1_at--478--1651Chr08:20116577..20116601 (25 bp)
AGCGCTATCGCTGGGCCAACAGAGT
LOC_Os08g32690
Target Sequence 
AATACAGTGGCCTCTAAATCAGTTAGATGCGTCTGATTTTCATGGTCAAGAGGTTACTCTTAAGTTGCACCGTGATGGAA
AATTGAGCAGTTTGGATAGTTCCTCAAAATCTTATGATCTTGTTAGCTTTGCTGCTCAGCAACCAGATGCAACTGTTTTC
CTTCCATCCGGACCAGAAGCAAAAGCTGGGAAGATTGCACGTCGAGTTAGCTTAGTTCGTTATCCTGACCCTGAAGAACC
GGAGAAGCCAGGTTTGGGGAGTCTCACTCCTAGCAGTAAGAAGTCTGCATCTTCAAAGAAGACGAGGTCTCGGTTCTCTA
GCGGGTCGAAGAACCGCAGCAGCCAAGGCTCAGCGCTATCGCTGGGCCAACAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis