Browse Element(s) Details


Os.21840.1.A1_at

Description gb:CB620258
DB_XREF= gi:29615245
DB_XREF=OSIIEa05F06.r
CLONE=OSIIEa05F06
TID=Os.21840.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.21840 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3269010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein
LOC_Os08g32690Os.46094.1.S1_at11/118+20115832..20121716expressed protein
LOC_Os08g32690Os.21840.1.A1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.1216.1.S1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.23497.1.A1_at1/118+20115832..20121716expressed protein
LOC_Os08g32700OsAffx.29478.1.S1_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32700OsAffx.29478.1.S1_x_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32710OsAffx.22011.1.S1_at11/118+20127932..20128253hypothetical protein
LOC_Os08g32720Os.55341.1.S1_x_at1/118+20131104..20131532hypothetical protein
LOC_Os08g32730Os.40855.2.S1_x_at11/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_at9/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_x_at7/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.5.S1_x_at3/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_x_at2/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_at1/118+20136880..20140664hypothetical protein
LOC_Os08g32740OsAffx.17302.2.S1_at9/118+20146456..20147956hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21840.1.A1_at--447--6751Chr08:20116324..20116348 (25 bp)
GTTAATTTTCCCTGAACTGTCGGCA
LOC_Os08g32690
Os.21840.1.A1_at--860--7571Chr08:20116215..20116239 (25 bp)
GGGCTGCAGCCCCATGCATGATATG
LOC_Os08g32690
Os.21840.1.A1_at--988--1251Chr08:20116131..20116155 (25 bp)
AGCTTGGTCGACAGGGCTTTACAAA
LOC_Os08g32690
Os.21840.1.A1_at--620--2291Chr08:20116052..20116075 (24 bp)
AAATGAGACCTGAGCTGTTTTGCCT
LOC_Os08g32690
Os.21840.1.A1_at--176--8791NONE
TGTTTTGCCTGTCAAGCCTTCACCT
NONE
Os.21840.1.A1_at--626--9671Chr08:20116017..20116041 (25 bp)
TCACCTTCACTGTTCGTCGTTGCGG
LOC_Os08g32690
Os.21840.1.A1_at--667--3551Chr08:20115980..20116004 (25 bp)
CATCTGAGCGGCTTTGGTCTGATTT
LOC_Os08g32690
Os.21840.1.A1_at--766--9451Chr08:20115962..20115987 (25 bp)
TCTGATTTGTCTTTGCGTCGGTTTA
LOC_Os08g32690
Os.21840.1.A1_at--418--9091Chr08:20115949..20115973 (25 bp)
TGCGTCGGTTTAATTGGTTTGCTAC
LOC_Os08g32690
Os.21840.1.A1_at--999--3631Chr08:20115928..20115952 (25 bp)
CTACCAATCTTGCTCTCCAAAAGGA
LOC_Os08g32690
Os.21840.1.A1_at--104--6891Chr08:20115887..20115911 (25 bp)
GTATTTTTGATTTGATGCTCCTGTT
LOC_Os08g32690
Target Sequence 
GTTAATTTTCCCTGAACTGTCGGCACTCCCCCGGAGCTTTGCAGGAAAGGCGTCTNGAATTTCCTNAGCATTTAGGTTGA
CTCAATTGCATTTNTGTGATGAGGCTCGAGGGCTGCAGCCCCATGCATGATATGCTGGAGTTATATCGTTATGGTTTATG
TATCTTNAAGAAGACATGTTTGGTNGGGCCTGAAGCTTGGTCGACAGGGCTTTACAAANCACCTTCTACTTGTTGCNAGC
CATGGAATGTAACATCTTTTGCATGAATCACACAAATGAGACCTGAGCTGTTTTGCCTGTCAAGCCTTCACCTTCACTGT
TCGTCGTTGCGGCGCTCGTCCATCCATCTGAGCGGCTTTGGTCTGATTTGTCTTTGCGTCGGTTTAATTGGTTTGCTACC
AATCTTGCTCTCCAAAAGGAGCTTATTATCCTATATGTATTTTTGATTTGATGCTCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21840.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis