Browse Element(s) Details


Os.8871.1.S1_at

Description gb:AK072624.1
DB_XREF= gi:32982647
TID=Os.8871.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8871 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077M12.18 (OSJNBa0077M12.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023129F07, full insert sequence.
FL= gb:AK072624.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3266010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32620Os.36050.1.S1_at10/118+20071789..20074935BAH domain containing protein, expressed
LOC_Os08g32630Os.38228.1.A1_x_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.17822.2.S1_s_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.1.A1_s_at10/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_x_at4/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_at2/118+20076018..20085987expressed protein
LOC_Os08g32630Os.35897.1.A1_at1/118+20076018..20085987expressed protein
LOC_Os08g32650Os.28454.1.S1_at10/118+20086397..20088991cation efflux family protein, expressed
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein
LOC_Os08g32690Os.46094.1.S1_at11/118+20115832..20121716expressed protein
LOC_Os08g32690Os.21840.1.A1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.1216.1.S1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.23497.1.A1_at1/118+20115832..20121716expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8871.1.S1_at--40--8471Chr08:20093162..20093186 (25 bp)
TGGCGCTAAACCCTGCATGATTGAG
LOC_Os08g32660
Os.8871.1.S1_at--818--6591Chr08:20093180..20093204 (25 bp)
GATTGAGATGGTGTCCTTCCTCAAC
LOC_Os08g32660
Os.8871.1.S1_at--1102--3631Chr08:20093195..20093219 (25 bp)
CTTCCTCAACTGCTTAGCTTTGAAC
LOC_Os08g32660
Os.8871.1.S1_at--1072--9551Chr08:20093495..20093519 (25 bp)
TCTTCATCATGTCTATTGCCTTGTC
LOC_Os08g32660
Os.8871.1.S1_at--1121--10211Chr08:20093508..20093532 (25 bp)
TATTGCCTTGTCCAGTCTGCAAGAC
LOC_Os08g32660
Os.8871.1.S1_at--437--7171Chr08:20093522..20093546 (25 bp)
GTCTGCAAGACTCAAGGCGTTATTT
LOC_Os08g32660
Os.8871.1.S1_at--1135--4611Chr08:20093538..20093562 (25 bp)
GCGTTATTTTCTTCCAAGTAGCCTT
LOC_Os08g32660
Os.8871.1.S1_at--103--311Chr08:20093599..20093623 (25 bp)
ATAATTTTTACATGCCAGACTGGGA
LOC_Os08g32660
Os.8871.1.S1_at--589--8351Chr08:20093676..20093700 (25 bp)
GGCGGTATACCTCCATTTTGGTTGA
LOC_Os08g32660
Os.8871.1.S1_at--607--4971Chr08:20093715..20093739 (25 bp)
GCATCATTTGCATCTCTGCCTATAA
LOC_Os08g32660
Os.8871.1.S1_at--402--3691Chr08:20093734..20093758 (25 bp)
CTATAAATTCTGCAGTTCTAACCCA
NONE
Target Sequence 
TGGCGCTAAACCCTGCATGATTGAGATGGTGTCCTTCCTCAACTGCTTAGCTTTGAACAAGCAGAATGATGACAAGTGTG
TCAGGCAGAAGGATCTCTTGGTTGCTTGTACTCAGGCTCAGAAAGGGAGGCCAAAGAATGCAANCGAAGACCATCAATTA
CCATCTTCAGCGGCTTGCGCGAGACAAGGGCTTGTAGCTTNCCCAANCCATACGGAATCATTTCTTCATCATGTCTATTG
CCTTGTCCAGTCTGCAAGACTCAAGGCGTTATTTTCTTCCAAGTAGCCTTGACGAAATGAGTAGTAGGGAAATGGCTAGC
ATAGAAATAATTTTTACATGCCAGACTGGGAATATCAGGACAATATCAATATGATTGTCTTATTAAATTGTTATTATTTA
TAAGGCGGTATACCTCCATTTTGGTTGATGTGTTTGACTGCTGCATCATTTGCATCTCTGCCTATAAATTCTGCAGTTCT
AACCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis