Browse Element(s) Details


Os.17822.2.S1_s_at

Description gb:BQ906866
DB_XREF= gi:22305644
DB_XREF=M020g04
CLONE=M020g04
TID=Os.17822.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077M12.16 (OSJNBa0077M12.16), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3263011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32590Os.31488.1.S1_at11/118+20051949..20053335retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os08g32600Os.32734.1.S1_at11/118+20054145..20059544Protein kinase domain containing protein, expressed
LOC_Os08g32610OsAffx.29477.1.S1_x_at11/118+20062870..20064679U-box domain containing protein, expressed
LOC_Os08g32620Os.36050.1.S1_at10/118+20071789..20074935BAH domain containing protein, expressed
LOC_Os08g32630Os.38228.1.A1_x_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.17822.2.S1_s_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.1.A1_s_at10/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_x_at4/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_at2/118+20076018..20085987expressed protein
LOC_Os08g32630Os.35897.1.A1_at1/118+20076018..20085987expressed protein
LOC_Os08g32650Os.28454.1.S1_at10/118+20086397..20088991cation efflux family protein, expressed
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17822.2.S1_s_at--646--2411Chr08:20085260..20085284 (25 bp)
AAAACTCTGGGTCTAGTAATGATCA
LOC_Os08g32630
Os.17822.2.S1_s_at--1052--1971Chr08:20085263..20085287 (25 bp)
ACTCTGGGTCTAGTAATGATCACTC
LOC_Os08g32630
Os.17822.2.S1_s_at--444--3891Chr08:20085266..20085290 (25 bp)
CTGGGTCTAGTAATGATCACTCGAC
LOC_Os08g32630
Os.17822.2.S1_s_at--639--7151Chr08:20085270..20085294 (25 bp)
GTCTAGTAATGATCACTCGACCACA
LOC_Os08g32630
Os.17822.2.S1_s_at--384--10051Chr08:20085273..20085297 (25 bp)
TAGTAATGATCACTCGACCACAGAT
LOC_Os08g32630
Os.17822.2.S1_s_at--549--7071Chr08:20085275..20085299 (25 bp)
GTAATGATCACTCGACCACAGATTT
LOC_Os08g32630
Os.17822.2.S1_s_at--697--2991Chr08:20085277..20085301 (25 bp)
AATGATCACTCGACCACAGATTTTG
LOC_Os08g32630
Os.17822.2.S1_s_at--986--8831Chr08:20085279..20085303 (25 bp)
TGATCACTCGACCACAGATTTTGCC
LOC_Os08g32630
Os.17822.2.S1_s_at--1052--371Chr08:20085281..20085305 (25 bp)
ATCACTCGACCACAGATTTTGCCTT
LOC_Os08g32630
Os.17822.2.S1_s_at--70--2011Chr08:20085284..20085308 (25 bp)
ACTCGACCACAGATTTTGCCTTCCA
LOC_Os08g32630
Os.17822.2.S1_s_at--441--9371Chr08:20085286..20085310 (25 bp)
TCGACCACAGATTTTGCCTTCCATT
LOC_Os08g32630
Target Sequence 
AAAACTCTGGGTCTAGTAATGATCACTCGACCACAGATTTTGCCTTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17822.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis