Browse Element(s) Details


OsAffx.17299.1.S1_at

Description tigr:9636.m03268
TID=OsAffx.17299.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3268011/11hypothetical protein
LOC_Os09g094201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g195401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32630Os.38228.1.A1_x_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.17822.2.S1_s_at11/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.1.A1_s_at10/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_x_at4/118+20076018..20085987expressed protein
LOC_Os08g32630Os.38228.2.A1_at2/118+20076018..20085987expressed protein
LOC_Os08g32630Os.35897.1.A1_at1/118+20076018..20085987expressed protein
LOC_Os08g32650Os.28454.1.S1_at10/118+20086397..20088991cation efflux family protein, expressed
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein
LOC_Os08g32690Os.46094.1.S1_at11/118+20115832..20121716expressed protein
LOC_Os08g32690Os.21840.1.A1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.1216.1.S1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.23497.1.A1_at1/118+20115832..20121716expressed protein
LOC_Os08g32700OsAffx.29478.1.S1_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32700OsAffx.29478.1.S1_x_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32710OsAffx.22011.1.S1_at11/118+20127932..20128253hypothetical protein
LOC_Os08g32720Os.55341.1.S1_x_at1/118+20131104..20131532hypothetical protein
LOC_Os08g32730Os.40855.2.S1_x_at11/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_at9/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_x_at7/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.5.S1_x_at3/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_x_at2/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_at1/118+20136880..20140664hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17299.1.S1_at--978--991Chr08:20111625..20111646 (22 bp)
AGGTTGCTGATTTTGCCAGATTAGA
LOC_Os08g32680
OsAffx.17299.1.S1_at--329--6291Chr08:20114008..20114032 (25 bp)
GATGTTGGCGAGATGGCCTGACCAA
LOC_Os08g32680
OsAffx.17299.1.S1_at--511--6231Chr08:20114019..20114043 (25 bp)
GATGGCCTGACCAATGGTGGACTGT
LOC_Os08g32680
OsAffx.17299.1.S1_at--937--10651Chr08:20114097..20114121 (25 bp)
TTCCGAGTAATGACGCGGTCGCGTT
LOC_Os08g32680
OsAffx.17299.1.S1_at--59--72311Chr11:26801130..26801154 (25 bp)
GTCGCGTTCCCGGAGATTGGCTGCA
NONE
OsAffx.17299.1.S1_at--740--10774Chr08:20114130..20114154 (25 bp)
TTGGCTGCACCAAAAGAGGCGTTCT
LOC_Os08g32680
OsAffx.17299.1.S1_at--763--1931Chr08:20114204..20114228 (25 bp)
ACGGAAATGAAGCTCACCGTCGATG
LOC_Os08g32680
OsAffx.17299.1.S1_at--840--6691Chr08:20114271..20114295 (25 bp)
GTTCCCAGCGAACCCGAGACGAGAT
LOC_Os08g32680
OsAffx.17299.1.S1_at--769--1391Chr08:20114287..20114311 (25 bp)
AGACGAGATGCCTCGGTTCTTCCGC
LOC_Os08g32680
OsAffx.17299.1.S1_at--959--7898Chr09:5056231..5056255 (25 bp)
GGTTCTTCCGCGAAACGAGACAAGG
LOC_Os09g09420
OsAffx.17299.1.S1_at--640--4711Chr08:20114350..20114374 (25 bp)
GCTGGTCGGCTTATATGGCGTCGCC
LOC_Os08g32680
Target Sequence 
AGGTTGCTGATTTTGCCAGATTAGAAAGAGGAAGAGAGAAATGGCGTCGGCGGTCGGAGTTGGGGAAGAAGAAGGGGATC
TCCCACCGTGGTCCACCTCGTGCCGATTCCTTCGGGGTTCTTGGTCAATGGGTGCTGGTGAAGATGTTGGCGAGATGGCC
TGACCAATGGTGGACTGTGGAAGCCGGGCGACGAGCAACAGCGATGCGACGGTGCCCAGAGCGCGGCGGCGTTCCGAGTA
ATGACGCGGTCGCGTTCCCGGAGATTGGCTGCACCAAAAGAGGCGTTCTTGGTGGCGTTAGAGACGGCATTGAGAGGGGG
TTACAGAACGCATATTTAACGGAAATGAAGCTCACCGTCGATGGCGTCGAGGACTTCTCTCGCCGGCGCCGAAGATGGCA
CCTCCGTTCCCAGCGAACCCGAGACGAGATGCCTCGGTTCTTCCGCGAAACGAGACAAGGGCAAGAGGGAGAGAAGGTTG
GTCGGCTGGTCGGCTTATATGGCGTCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17299.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis