Browse Element(s) Details


OsAffx.1216.1.S1_at

Description gb:NM_188941.1
DB_XREF= gi:34904965
GEN=OSJNBa0077M12.26
TID=OsAffx.1216.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0077M12.26 (OSJNBa0077M12.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3269010/11expressed protein
LOC_Os06g402401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32660Os.8871.1.S1_at10/118+20090882..20093757expressed protein
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein
LOC_Os08g32690Os.46094.1.S1_at11/118+20115832..20121716expressed protein
LOC_Os08g32690Os.21840.1.A1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.1216.1.S1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.23497.1.A1_at1/118+20115832..20121716expressed protein
LOC_Os08g32700OsAffx.29478.1.S1_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32700OsAffx.29478.1.S1_x_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32710OsAffx.22011.1.S1_at11/118+20127932..20128253hypothetical protein
LOC_Os08g32720Os.55341.1.S1_x_at1/118+20131104..20131532hypothetical protein
LOC_Os08g32730Os.40855.2.S1_x_at11/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_at9/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_x_at7/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.5.S1_x_at3/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_x_at2/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_at1/118+20136880..20140664hypothetical protein
LOC_Os08g32740OsAffx.17302.2.S1_at9/118+20146456..20147956hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1216.1.S1_at--826--9131Chr08:20121136..20121160 (25 bp)
TGCGGTCGTTGCATTGCGTGCAGCC
LOC_Os08g32690
OsAffx.1216.1.S1_at--358--7811Chr08:20121098..20121122 (25 bp)
GGTCGGGTGCTGACAAATCTCGCAA
LOC_Os08g32690
OsAffx.1216.1.S1_at--967--9352Chr06:23967379..23967403 (25 bp)
TCGCAAGTCCAATGCAAATGCCCTT
LOC_Os06g40240
OsAffx.1216.1.S1_at--693--5011Chr08:20121053..20121077 (25 bp)
GCAGGTCTCCTCCTTCGAAAAGGAC
LOC_Os08g32690
OsAffx.1216.1.S1_at--107--5511Chr08:20121037..20121061 (25 bp)
GAAAAGGACCACAGCCAAGCCGAAA
LOC_Os08g32690
OsAffx.1216.1.S1_at--362--9411Chr08:20121010..20121034 (25 bp)
TCGTCTTGCAGTTGAAGGAGCTCCT
LOC_Os08g32690
OsAffx.1216.1.S1_at--622--2651Chr08:20120842..20121001 (25 bp)
AAGCCATCTTGCAGGCGAGGTTGGT
LOC_Os08g32690
OsAffx.1216.1.S1_at--831--5051Chr08:20120805..20120829 (25 bp)
GCAGCAGCAAGCTACCATTTTCTTT
LOC_Os08g32690
OsAffx.1216.1.S1_at--407--10411NONE
TTTTGGACTCCAGGACACGCGGCAG
NONE
OsAffx.1216.1.S1_at--514--3351Chr08:20120349..20120373 (25 bp)
CACGCGGCAGCGGATCTTGCATGGA
LOC_Os08g32690
OsAffx.1216.1.S1_at--1089--9031Chr08:20120220..20120244 (25 bp)
TGCAGCCGCTTGCAGCGAGTTCAAA
LOC_Os08g32690
Target Sequence 
TGCGGTCGTTGCATTGCGTGCAGCCCCAGCGGTCGTCGGGTCGGGTGCTGACAAATCTCGCAAGTCCAATGCAAATGCCC
TTCGCAGGTCTCCTCCTTCGAAAAGGACCACAGCCAAGCCGAAAAGTCGTCTTGCAGTTGAAGGAGCTCCTGCTCCGAAA
AGCCATCTTGCAGGCGAGGTTGGTGCAGTACAATCAGCAGCAGCAAGCTACCATTTTCTTTTGGACTCCAGGACACGCGG
CAGCGGATCTTGCATGGAGGAGAGGAGCAGCTTCTTGGCGCCGACGGTGCGGAGATGGCGATCTGGCGGAGCGTTGCCAG
GAGATGACGCCGGAGCGGAGGACGAGGGGGAGCCGGTGGAGCTGCAGCCGCTTGCAGCGAGTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1216.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis