Browse Element(s) Details


OsAffx.22011.1.S1_at

Description gb:NM_188945.1
DB_XREF= gi:34904973
GEN=OSJNBa0077M12.30
TID=OsAffx.22011.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0077M12.30 (OSJNBa0077M12.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3271011/11hypothetical protein
LOC_Os12g329101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32680OsAffx.17299.1.S1_at11/118+20108604..20114449hypothetical protein
LOC_Os08g32690Os.46094.1.S1_at11/118+20115832..20121716expressed protein
LOC_Os08g32690Os.21840.1.A1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.1216.1.S1_at10/118+20115832..20121716expressed protein
LOC_Os08g32690OsAffx.23497.1.A1_at1/118+20115832..20121716expressed protein
LOC_Os08g32700OsAffx.29478.1.S1_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32700OsAffx.29478.1.S1_x_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32710OsAffx.22011.1.S1_at11/118+20127932..20128253hypothetical protein
LOC_Os08g32720Os.55341.1.S1_x_at1/118+20131104..20131532hypothetical protein
LOC_Os08g32730Os.40855.2.S1_x_at11/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_at9/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_x_at7/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.5.S1_x_at3/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_x_at2/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_at1/118+20136880..20140664hypothetical protein
LOC_Os08g32740OsAffx.17302.2.S1_at9/118+20146456..20147956hypothetical protein
LOC_Os08g32750Os.17697.1.A1_at11/118+20150203..20152643Eukaryotic-type carbonic anhydrase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22011.1.S1_at--987--7991Chr08:20128199..20128223 (25 bp)
GGAGGCAAATCTGACAATGCTGGCC
LOC_Os08g32710
OsAffx.22011.1.S1_at--770--2271Chr08:20128193..20128217 (25 bp)
AAATCTGACAATGCTGGCCTCGAGA
LOC_Os08g32710
OsAffx.22011.1.S1_at--239--9471Chr08:20128190..20128214 (25 bp)
TCTGACAATGCTGGCCTCGAGAAGG
LOC_Os08g32710
OsAffx.22011.1.S1_at--798--3011Chr08:20128184..20128208 (25 bp)
AATGCTGGCCTCGAGAAGGACGGAT
LOC_Os08g32710
OsAffx.22011.1.S1_at--292--8431Chr08:20128178..20128202 (25 bp)
GGCCTCGAGAAGGACGGATCCGCCA
LOC_Os08g32710
OsAffx.22011.1.S1_at--918--4251Chr08:20128176..20128200 (25 bp)
CCTCGAGAAGGACGGATCCGCCACT
LOC_Os08g32710
OsAffx.22011.1.S1_at--1052--1951Chr08:20128154..20128178 (25 bp)
ACTCTGGGCCCTGGAAAGGCGACGA
LOC_Os08g32710
OsAffx.22011.1.S1_at--474--4051Chr08:20128132..20128156 (25 bp)
CGATGACTAGGGTGTCGGCGCTGGC
LOC_Os08g32710
OsAffx.22011.1.S1_at--776--8471Chr08:20128111..20128135 (25 bp)
TGGCGAACTTGAGGGCAGCAGATCC
LOC_Os08g32710
OsAffx.22011.1.S1_at--411--9152Chr12:19856977..19856998 (22 bp)
TGCCCTCGGCCCTGGGAGAGGTGAT
LOC_Os12g32910
OsAffx.22011.1.S1_at--601--8371Chr08:20127958..20127979 (22 bp)
GGCGATGGGCGGCTTAATGTTCCTT
LOC_Os08g32710
Target Sequence 
GGAGGCAAATCTGACAATGCTGGCCTCGAGAAGGACGGATCCGCCACTCTGGGCCCTGGAAAGGCGACGATGACTAGGGT
GTCGGCGCTGGCGAACTTGAGGGCAGCAGATCCGGCAGCGCTGCCCTCGGCCCTGGGAGAGGTGATGGCGATGGCGGGCG
GCGATGGGCGGCTTAATGTTCCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis