Browse Element(s) Details


Os.17697.1.A1_at

Description gb:CF326739
DB_XREF= gi:33801734
DB_XREF=JMT1--06-O07.g1
CLONE=JMT1--06-O07
TID=Os.17697.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.17697 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative carbonic anhydrase precursor (OSJNBa0077M12.36), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3275011/11Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g327801/11Eukaryotic-type carbonic anhydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g32700OsAffx.29478.1.S1_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32700OsAffx.29478.1.S1_x_at9/118+20123865..20125616hypothetical protein
LOC_Os08g32710OsAffx.22011.1.S1_at11/118+20127932..20128253hypothetical protein
LOC_Os08g32720Os.55341.1.S1_x_at1/118+20131104..20131532hypothetical protein
LOC_Os08g32730Os.40855.2.S1_x_at11/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_at9/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40360.1.S1_x_at7/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.5.S1_x_at3/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_x_at2/118+20136880..20140664hypothetical protein
LOC_Os08g32730Os.40855.4.S1_at1/118+20136880..20140664hypothetical protein
LOC_Os08g32740OsAffx.17302.2.S1_at9/118+20146456..20147956hypothetical protein
LOC_Os08g32750Os.17697.1.A1_at11/118+20150203..20152643Eukaryotic-type carbonic anhydrase family protein, expressed
LOC_Os08g32760NANA8+20158666..20164824transposon protein, putative, unclassified
LOC_Os08g32770NANA8+20165457..20168638retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006730biological_processone-carbon compound metabolism
GO:0004089molecular_functioncarbonate dehydratase activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17697.1.A1_at--934--5651Chr08:20151454..20151478 (25 bp)
GACAGGATACCGTGTACTACCGCTA
LOC_Os08g32750
Os.17697.1.A1_at--1039--3871Chr08:20152134..20152260 (25 bp)
CTGTGCTCACGGGTAACGAGAACAA
LOC_Os08g32750
Os.17697.1.A1_at--337--9811Chr08:20152249..20152273 (25 bp)
TAACGAGAACAACGCGAGACCCCTT
LOC_Os08g32750
Os.17697.1.A1_at--714--5991Chr08:20152264..20152288 (25 bp)
GAGACCCCTTCAGGGCGTGAACAAC
LOC_Os08g32750
Os.17697.1.A1_at--493--3751Chr08:20152317..20152341 (25 bp)
CTCTCATCAACAACTGAACAGCATG
LOC_Os08g32750
Os.17697.1.A1_at--223--7071Chr08:20152443..20152467 (25 bp)
GTAATCTTATCCTAATGGTGTCGCT
LOC_Os08g32750
Os.17697.1.A1_at--66--571Chr08:20152451..20152475 (25 bp)
ATCCTAATGGTGTCGCTTATATATA
LOC_Os08g32750
Os.17697.1.A1_at--879--10192Chr08:20152482..20152506 (25 bp)
TATATCGTCTTGATCACCTAGCTTC
LOC_Os08g32750
Os.17697.1.A1_at--1012--9631Chr08:20152495..20152519 (25 bp)
TCACCTAGCTTCGTAAAGAGAGATC
LOC_Os08g32750
Os.17697.1.A1_at--461--6011Chr08:20152512..20152536 (25 bp)
GAGAGATCAGCATATATGTTGTTCA
LOC_Os08g32750
Os.17697.1.A1_at--124--6651Chr08:20152529..20152553 (25 bp)
GTTGTTCAATCACATCTGCATAGCA
LOC_Os08g32750
Target Sequence 
GACAGGATACCGTGTACTACCGCTACATGGGCTCCTTTACCACACCACCTTGCACTGAGGGAGTCATCTGGACCGTTGTC
AGGAAGGTGCGCACCGTGTCACTGTCCCAAATCACACTTCTCAAGGCAGCTGTGCTCACGGGTAACGAGAACAACGCGAG
ACCCCTTCAGGGCGTGAACAACAGGGAGATTGACCTGTTCCTTCCTCTCCCTCTCATCAACAACTGAACAGCATGCTTNA
CATACACAGCTGATTTACAACGCATCGCCTGACACACGCATGGAGAATCAGCAAACATATGTGTACTAATAAATATATAG
TATTACTCATGTTTGTGTAATCTTATCCTAATGGTGTCGCTTATATATATATATATATATCGTCTTGATCACCTAGCTTC
GTAAAGAGAGATCAGCATATATGTTGTTCAATCACATCTGCATAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17697.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis