Browse Element(s) Details


Os.55341.1.S1_x_at

Description gb:AK107903.1
DB_XREF= gi:32993112
TID=Os.55341.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55341 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-F10, full insert sequence.
FL= gb:AK107903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2530011/11expressed protein
LOC_Os08g327201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25270Os.40577.1.S1_at2/111+14246895..14249528PPR986-12, putative
LOC_Os01g25280Os.46023.1.S1_at10/111+14263227..14264668Salt stress-induced protein, putative, expressed
LOC_Os01g25290OsAffx.2083.1.S1_at6/111+14268430..14269491hypothetical protein
LOC_Os01g25300Os.52041.1.S1_at11/111+14272854..14274147expressed protein
LOC_Os01g25300Os.55341.1.S1_x_at11/111+14272854..14274147expressed protein
LOC_Os01g25320Os.33510.1.S2_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.1.S1_x_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.2.S1_s_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320OsAffx.11200.1.S1_at10/111+14274596..14285672TolA protein, expressed
LOC_Os01g25330Os.5428.2.S1_x_at11/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25330Os.5428.1.S1_at10/111+14290640..14299172sacI homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55341.1.S1_x_at--1128--4111Chr01:14272903..14272927 (25 bp)
CGCAGGTGATGCAGGAGCCCGCAAT
LOC_Os01g25300
Os.55341.1.S1_x_at--898--2951Chr01:14272925..14272949 (25 bp)
AATGGCAGGGTCGACCAACACCGTC
LOC_Os01g25300
Os.55341.1.S1_x_at--508--3311Chr01:14272989..14273013 (25 bp)
CACGACTTCCGGTTCGTACGGCTAT
LOC_Os01g25300
Os.55341.1.S1_x_at--1140--7792Chr01:14273028..14273052 (25 bp)
GGTCGCCGGCGAAGAGGACTTCTAC
LOC_Os01g25300
Os.55341.1.S1_x_at--455--1331Chr01:14273040..14273064 (25 bp)
AGAGGACTTCTACCAGTCCGAGGCC
LOC_Os01g25300
Os.55341.1.S1_x_at--400--7191Chr01:14273071..14273095 (25 bp)
GTCGGCGGCCACAACTGGGCAATCC
LOC_Os01g25300
Os.55341.1.S1_x_at--404--4651Chr01:14273119..14273143 (25 bp)
GCGTCAGCTCCAGGGTGTCTCTCTA
LOC_Os01g25300
Os.55341.1.S1_x_at--856--10571Chr01:14273149..14273173 (25 bp)
TTCTCCTGAGCAGACCGGCGGACGA
LOC_Os01g25300
Os.55341.1.S1_x_at--863--5091Chr01:14273203..14273227 (25 bp)
GCACGCTGCTGGACAAATCCGGCAA
LOC_Os01g25300
Os.55341.1.S1_x_at--600--8371Chr01:14273231..14273255 (25 bp)
GGCGTCGCCGGAGTCCAAGGACACT
LOC_Os01g25300
Os.55341.1.S1_x_at--423--1991Chr01:14273253..14273277 (25 bp)
ACTGCGGACAGTGCTCACACGCATT
LOC_Os01g25300
Target Sequence 
CGCAGGTGATGCAGGAGCCCGCAATGGCAGGGTCGACCAACACCGTCGTCCAAACCATCAGCGTCACCGCCGCGGCAACA
GGGGTCCACGACTTCCGGTTCGTACGGCTATTCCCTCACCAAGGCGGTCGCCGGCGAAGAGGACTTCTACCAGTCCGAGG
CCTTCTCCGTCGGCGGCCACAACTGGGCAATCCGCTACTACCCCAAGTCCCCAACCGCGTCAGCTCCAGGGTGTCTCTCT
ACCCCGTTCTCCTGAGCAGACCGGCGGACGATGATGGTCGCGTGCACGCGTCGTTCGCGTGCACGCTGCTGGACAAATCC
GGCAAGCCGGCGTCGCCGGAGTCCAAGGACACTGCGGACAGTGCTCACACGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55341.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis