Browse Element(s) Details


Os.33510.2.S1_s_at

Description gb:NM_193971.1
DB_XREF= gi:34915025
GEN=P0458A05.18
TID=Os.33510.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.33510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458A05.19 (P0458A05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0458A05.18 (P0458A05.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2532011/11TolA protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25280Os.46023.1.S1_at10/111+14263227..14264668Salt stress-induced protein, putative, expressed
LOC_Os01g25290OsAffx.2083.1.S1_at6/111+14268430..14269491hypothetical protein
LOC_Os01g25300Os.52041.1.S1_at11/111+14272854..14274147expressed protein
LOC_Os01g25300Os.55341.1.S1_x_at11/111+14272854..14274147expressed protein
LOC_Os01g25320Os.33510.1.S2_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.1.S1_x_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.2.S1_s_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320OsAffx.11200.1.S1_at10/111+14274596..14285672TolA protein, expressed
LOC_Os01g25330Os.5428.2.S1_x_at11/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25330Os.5428.1.S1_at10/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25340OsAffx.8868.1.S1_at11/111+14300740..14302048hypothetical protein
LOC_Os01g25360Os.6157.1.S1_at1/111+14308667..14309528hydrolase, alpha/beta fold family protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33510.2.S1_s_at--294--4271Chr01:14276846..14276870 (25 bp)
CCTGAATGTGGGTGGCGACCTGTAT
LOC_Os01g25320
Os.33510.2.S1_s_at--121--7731Chr01:14276836..14276860 (25 bp)
GGTGGCGACCTGTATCATTGACTGA
LOC_Os01g25320
Os.33510.2.S1_s_at--481--4611Chr01:14276832..14276856 (25 bp)
GCGACCTGTATCATTGACTGATTTG
LOC_Os01g25320
Os.33510.2.S1_s_at--655--5731Chr01:14276817..14276841 (25 bp)
GACTGATTTGATTACAGCCGCATCT
LOC_Os01g25320
Os.33510.2.S1_s_at--742--6551Chr01:14276808..14276832 (25 bp)
GATTACAGCCGCATCTGTCAAGAAA
LOC_Os01g25320
Os.33510.2.S1_s_at--176--3391Chr01:14276803..14276827 (25 bp)
CAGCCGCATCTGTCAAGAAAGAATA
LOC_Os01g25320
Os.33510.2.S1_s_at--553--5151Chr01:14276771..14276795 (25 bp)
GCAACATTATGCATCCATCCTGATA
LOC_Os01g25320
Os.33510.2.S1_s_at--721--10431Chr01:14276765..14276789 (25 bp)
TTATGCATCCATCCTGATAAGGTGC
LOC_Os01g25320
Os.33510.2.S1_s_at--649--2891Chr01:14276735..14276759 (25 bp)
AAGGGTGCAAATCTTCAACAGAAAT
LOC_Os01g25320
Os.33510.2.S1_s_at--344--9891Chr01:14276711..14276735 (25 bp)
TACATTGCAGAAAAGGTGTTCGACC
LOC_Os01g25320
Os.33510.2.S1_s_at--18--5531Chr01:14276702..14276726 (25 bp)
GAAAAGGTGTTCGACCTTCTGAAGG
LOC_Os01g25320
Target Sequence 
CCTGAATGTGGGTGGCGACCTGTATCATTGACTGATTTGATTACAGCCGCATCTGTCAAGAAAGAATACAGGAAAGCAAC
ATTATGCATCCATCCTGATAAGGTGCAGCAAAAGGGTGCAAATCTTCAACAGAAATACATTGCAGAAAAGGTGTTCGACC
TTCTGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33510.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis