Browse Element(s) Details


Os.33510.1.S1_x_at

Description gb:AK119920.1
DB_XREF= gi:37989543
TID=Os.33510.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458A05.19 (P0458A05.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-G06, full insert sequence.
FL= gb:AK100317.1 gb:AK119920.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2532011/11TolA protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25280Os.46023.1.S1_at10/111+14263227..14264668Salt stress-induced protein, putative, expressed
LOC_Os01g25290OsAffx.2083.1.S1_at6/111+14268430..14269491hypothetical protein
LOC_Os01g25300Os.52041.1.S1_at11/111+14272854..14274147expressed protein
LOC_Os01g25300Os.55341.1.S1_x_at11/111+14272854..14274147expressed protein
LOC_Os01g25320Os.33510.1.S2_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.1.S1_x_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.2.S1_s_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320OsAffx.11200.1.S1_at10/111+14274596..14285672TolA protein, expressed
LOC_Os01g25330Os.5428.2.S1_x_at11/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25330Os.5428.1.S1_at10/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25340OsAffx.8868.1.S1_at11/111+14300740..14302048hypothetical protein
LOC_Os01g25360Os.6157.1.S1_at1/111+14308667..14309528hydrolase, alpha/beta fold family protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33510.1.S1_x_at--494--671Chr01:14283069..14283093 (25 bp)
ATGAAGCTCCTGGAACCACTGGTTT
LOC_Os01g25320
Os.33510.1.S1_x_at--607--2831Chr01:14283020..14283044 (25 bp)
AAGTATGCAGGACCAGTTGCCAGAG
LOC_Os01g25320
Os.33510.1.S1_x_at--494--2971Chr01:14282988..14283012 (25 bp)
AATGTTCCAAAATGTCCGACGACGT
LOC_Os01g25320
Os.33510.1.S1_x_at--743--4071Chr01:14282972..14282996 (25 bp)
CGACGACGTGTGGTTGACTGTTTCA
LOC_Os01g25320
Os.33510.1.S1_x_at--976--10331Chr01:14282939..14282963 (25 bp)
TTTAGTGACACAGCCTACGAGTGCT
LOC_Os01g25320
Os.33510.1.S1_x_at--945--10251Chr01:14282755..14282779 (25 bp)
TTTGTCATGGCAAAGCCTTCTAGCT
LOC_Os01g25320
Os.33510.1.S1_x_at--778--10011Chr01:14282735..14282759 (25 bp)
TAGCTTGGCTAATGGTTGTCTGCAA
LOC_Os01g25320
Os.33510.1.S1_x_at--464--6571Chr01:14282677..14282701 (25 bp)
GATTCATCTACATCTGCTGCAGGTT
LOC_Os01g25320
Os.33510.1.S1_x_at--1138--2031Chr01:14282604..14282628 (25 bp)
ACTTTGATTCTTTGTTCGCTAGCAG
LOC_Os01g25320
Os.33510.1.S1_x_at--56--8811Chr01:14282592..14282616 (25 bp)
TGTTCGCTAGCAGTCAGTACCAAGA
LOC_Os01g25320
Os.33510.1.S1_x_at--359--1531Chr01:14282558..14282582 (25 bp)
AGCAGTGCTCTATGCTTCTGGAATG
LOC_Os01g25320
Target Sequence 
ATGAAGCTCCTGGAACCACTGGTTTCAATAATTCAGATCCACTTTCTACAAGTATGCAGGACCAGTTGCCAGAGGAGAAT
CAATGTTCCAAAATGTCCGACGACGTGTGGTTGACTGTTTCAGATGTTGTTTTAGTGACACAGCCTACGAGTGCTCCACC
TCCTTCACGGCCTCCCCCTACGCTTGCCGCCAAGAAAGGACCAACGGAATCCAACACTAGTAATGCATATCCACATGATC
ATAATCAAGGTTACAATCCTTTTATAAGTTCAACAAATACTTCTAAAACACCCAAAATTGATGAATTAGAAGATTTTGTC
ATGGCAAAGCCTTCTAGCTTGGCTAATGGTTGTCTGCAAGATCTAAATCATAATGGAATTGGGATTGGACAAGATTCATC
TACATCTGCTGCAGGTTTCATGGATTGGGCTGAGCTAAAACACTCTAAAGGGGTGAACCAAGGGAACTTTGATTCTTTGT
TCGCTAGCAGTCAGTACCAAGAAAAAGAGAAAGCAGTGCTCTATGCTTCTGGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33510.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis