Browse Element(s) Details


Os.5428.2.S1_x_at

Description gb:NM_193973.1
DB_XREF= gi:34915029
GEN=P0458A05.20
TID=Os.5428.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.5428 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0458A05.20 (P0458A05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0458A05.20 (P0458A05.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2533011/11sacI homology domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25290OsAffx.2083.1.S1_at6/111+14268430..14269491hypothetical protein
LOC_Os01g25300Os.52041.1.S1_at11/111+14272854..14274147expressed protein
LOC_Os01g25300Os.55341.1.S1_x_at11/111+14272854..14274147expressed protein
LOC_Os01g25320Os.33510.1.S2_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.1.S1_x_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.2.S1_s_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320OsAffx.11200.1.S1_at10/111+14274596..14285672TolA protein, expressed
LOC_Os01g25330Os.5428.2.S1_x_at11/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25330Os.5428.1.S1_at10/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25340OsAffx.8868.1.S1_at11/111+14300740..14302048hypothetical protein
LOC_Os01g25360Os.6157.1.S1_at1/111+14308667..14309528hydrolase, alpha/beta fold family protein
LOC_Os01g25370OsAffx.23390.1.S1_x_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25370OsAffx.23390.1.S1_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25370Os.4146.1.S1_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25386Os.27603.1.S1_at11/111+14322615..14339725glutathione-conjugate transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006970biological_processresponse to osmotic stress
GO:0009409biological_processresponse to cold
GO:0009644biological_processresponse to high light intensity
GO:0046488biological_processphosphatidylinositol metabolism
GO:0048015biological_processphosphoinositide-mediated signaling
GO:0004437molecular_functioninositol or phosphatidylinositol phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5428.2.S1_x_at--1068--8051Chr01:14296895..14296919 (25 bp)
GGAGACAAATCCTGACACATCTATG
LOC_Os01g25330
Os.5428.2.S1_x_at--260--1271Chr01:14296946..14296970 (25 bp)
AGATAGATCGCAACCACTGGGCAGA
LOC_Os01g25330
Os.5428.2.S1_x_at--606--10151Chr01:14297108..14297132 (25 bp)
TATCTCTTGCCTAATACACCTGGAA
LOC_Os01g25330
Os.5428.2.S1_x_at--163--311Chr01:14297132..14297156 (25 bp)
ATAGCTGGATTTCGCCTTGATTTCT
LOC_Os01g25330
Os.5428.2.S1_x_at--259--711Chr01:14297160..14297184 (25 bp)
ATGTTGTTAGACTGCGGGTGACCCA
LOC_Os01g25330
Os.5428.2.S1_x_at--593--9671Chr01:14297186..14297210 (25 bp)
TCACCTTCCTCGTCAGAGTTGGATA
LOC_Os01g25330
Os.5428.2.S1_x_at--654--7351Chr01:14297692..14297716 (25 bp)
GTGAATACTCCACTCTATTATGATT
LOC_Os01g25330
Os.5428.2.S1_x_at--534--771Chr01:14297735..14297759 (25 bp)
ATGTCCGTTGTGTTCTCTTTAGATT
LOC_Os01g25330
Os.5428.2.S1_x_at--477--1991Chr01:14297773..14297797 (25 bp)
ACTGCCTTTGTGGATGACATTGCCG
LOC_Os01g25330
Os.5428.2.S1_x_at--357--2511Chr01:14297812..14297836 (25 bp)
AACTTGCGAAATCTTCCTTTGGCCA
LOC_Os01g25330
Os.5428.2.S1_x_at--879--8451Chr01:14297831..14297855 (25 bp)
TGGCCACTGGGTTGTCTTTGTCAAA
LOC_Os01g25330
Target Sequence 
GGAGACAAATCCTGACACATCTATGGGAATAATGAGGATGAAGACTTATTTAGATAGATCGCAACCACTGGGCAGATTTA
GGATTCCAGTTGAAGCTGAAAGGCTGAGAGATAATGATCTTGTTTTGGAGCAATATCTCTTGCCTAATACACCTGGAATA
GCTGGATTTCGCCTTGATTTCTTCAATGTTGTTAGACTGCGGGTGACCCATTCACCTTCCTCGTCAGAGTTGGATATGAA
GGAATTTTCATTGATACCTATGGAAGATAGAGTTATAAATCCAGCAATTCTTTATTTACAAGTCACAATTGTTAAGGAGT
CTGGAAAGCTGGTTGTTGAGGAATACCGTTTACCAGAAGTAAAAGTGAATACTCCACTCTATTATGATTTTCAAGATTTA
CAACAAGATGTCCGTTGTGTTCTCTTTAGATTACTTGGGGATGTCACTGCCTTTGTGGATGACATTGCCGAGATTGATGG
CTCAAACTTGCGAAATCTTCCTTTGGCCACTGGGTTGTCTTTGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5428.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis