Browse Element(s) Details


OsAffx.23390.1.S1_at

Description tigr:9629.m02460
TID=OsAffx.23390.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ulp1 protease family, C-terminal catalytic domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2537011/11SUMO protease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25330Os.5428.2.S1_x_at11/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25330Os.5428.1.S1_at10/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25340OsAffx.8868.1.S1_at11/111+14300740..14302048hypothetical protein
LOC_Os01g25360Os.6157.1.S1_at1/111+14308667..14309528hydrolase, alpha/beta fold family protein
LOC_Os01g25370OsAffx.23390.1.S1_x_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25370OsAffx.23390.1.S1_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25370Os.4146.1.S1_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25386Os.27603.1.S1_at11/111+14322615..14339725glutathione-conjugate transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009909biological_processregulation of flower development
GO:0009911biological_processpositive regulation of flower development
GO:0005634cellular_componentnucleus
GO:0008234molecular_functioncysteine-type peptidase activity
GO:0016929molecular_functionSUMO-specific protease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23390.1.S1_at--71--2831Chr01:14312648..14312672 (25 bp)
AAGTAGTATAATCTGACTGTCTGAT
LOC_Os01g25370
OsAffx.23390.1.S1_at--1083--471Chr01:14312638..14312662 (25 bp)
ATCTGACTGTCTGATTAGTTGCTTG
LOC_Os01g25370
OsAffx.23390.1.S1_at--698--5731Chr01:14312634..14312658 (25 bp)
GACTGTCTGATTAGTTGCTTGGTTT
LOC_Os01g25370
OsAffx.23390.1.S1_at--407--3871Chr01:14312628..14312652 (25 bp)
CTGATTAGTTGCTTGGTTTGTGTCT
LOC_Os01g25370
OsAffx.23390.1.S1_at--660--10451Chr01:14312624..14312648 (25 bp)
TTAGTTGCTTGGTTTGTGTCTATAC
LOC_Os01g25370
OsAffx.23390.1.S1_at--517--6671Chr01:14312621..14312645 (25 bp)
GTTGCTTGGTTTGTGTCTATACATG
LOC_Os01g25370
OsAffx.23390.1.S1_at--529--7451Chr01:14312609..14312633 (25 bp)
GTGTCTATACATGAGAAAATCTGAT
LOC_Os01g25370
OsAffx.23390.1.S1_at--748--2271Chr01:14312593..14312617 (25 bp)
AAATCTGATGGCTTTTGAAATTCCT
LOC_Os01g25370
OsAffx.23390.1.S1_at--496--9471Chr01:14312590..14312614 (25 bp)
TCTGATGGCTTTTGAAATTCCTTTC
LOC_Os01g25370
OsAffx.23390.1.S1_at--761--6231Chr01:14312587..14312611 (25 bp)
GATGGCTTTTGAAATTCCTTTCTTA
LOC_Os01g25370
OsAffx.23390.1.S1_at--942--9531Chr01:14312559..14312583 (25 bp)
TCTACTGAAGTGATGGTATGGGTCA
LOC_Os01g25370
Target Sequence 
AAGTAGTATAATCTGACTGTCTGATTAGTTGCTTGGTTTGTGTCTATACATGAGAAAATCTGATGGCTTTTGAAATTCCT
TTCTTAATTTCTACTGAAGTGATGGTATGGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis