Browse Element(s) Details


Os.27603.1.S1_at

Description gb:NM_193977.1
DB_XREF= gi:34915037
GEN=B1157F09.14
TID=Os.27603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27603 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative multi resistance protein ABC transporter (B1157F09.14), mRNA.
PROD=putative multi resistance protein ABCtransporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2538611/11glutathione-conjugate transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25330Os.5428.2.S1_x_at11/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25330Os.5428.1.S1_at10/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25340OsAffx.8868.1.S1_at11/111+14300740..14302048hypothetical protein
LOC_Os01g25360Os.6157.1.S1_at1/111+14308667..14309528hydrolase, alpha/beta fold family protein
LOC_Os01g25370OsAffx.23390.1.S1_x_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25370OsAffx.23390.1.S1_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25370Os.4146.1.S1_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25386Os.27603.1.S1_at11/111+14322615..14339725glutathione-conjugate transporter, putative, expressed
LOC_Os01g25402Os.46306.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25402Os.45976.1.S1_x_at4/111+14347661..14356810transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25420OsAffx.23391.1.S1_at11/111+14359499..14360209NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27603.1.S1_at--10--10091Chr01:14324048..14324072 (25 bp)
TAGGGCTCCATGATCTGAGGTCTCG
LOC_Os01g25386
Os.27603.1.S1_at--499--8891Chr01:14324033..14324057 (25 bp)
TGAGGTCTCGGTTCGGCATTATCCC
LOC_Os01g25386
Os.27603.1.S1_at--1004--871Chr01:14323855..14323879 (25 bp)
AGGCCTTGGAACGTTGTCAGCTGAA
LOC_Os01g25386
Os.27603.1.S1_at--553--6331Chr01:14323829..14323853 (25 bp)
GATGCAGTGACTTCAAAACCCGAGA
LOC_Os01g25386
Os.27603.1.S1_at--179--8711Chr01:14323523..14323547 (25 bp)
TGTGCCTTGGCCGAGTGATGCTGAA
LOC_Os01g25386
Os.27603.1.S1_at--186--8571Chr01:14323457..14323481 (25 bp)
TGGATTCCCGAACCGATGCCGTGAT
LOC_Os01g25386
Os.27603.1.S1_at--619--551Chr01:14323422..14323446 (25 bp)
ATCCGGGAAGAGTTCTCAGCCTGCA
LOC_Os01g25386
Os.27603.1.S1_at--800--311Chr01:14323374..14323398 (25 bp)
ATACCGACGGTCATGGACTGCGACA
LOC_Os01g25386
Os.27603.1.S1_at--685--1971Chr01:14323358..14323382 (25 bp)
ACTGCGACAGAGTCCTGGTCATCGA
LOC_Os01g25386
Os.27603.1.S1_at--745--5651Chr01:14323164..14323188 (25 bp)
GACAGTCCTGCAAACCTGATCGAAA
LOC_Os01g25386
Os.27603.1.S1_at--1135--5571Chr01:14323143..14323167 (25 bp)
GAAAGGCCATCACTGTTTGGAGCAT
LOC_Os01g25386
Target Sequence 
TAGGGCTCCATGATCTGAGGTCTCGGTTCGGCATTATCCCTCAGGAGCCTGTCCTCTTCGAAGGGACGATTCGAAGCAAC
ATCGACCCGCTTCAGCTGTACTCTGATGATGAAATTTGGCAGGCCTTGGAACGTTGTCAGCTGAAAGATGCAGTGACTTC
AAAACCCGAGAAGCTTGATGCATCAGTTGTCGACAACGGCGAGAACTGGAGTGTTGGGCAGAGGCAGTTGCTGTGCCTTG
GCCGAGTGATGCTGAAGCACAGCAGGATACTGTTCATGGACGAGGCCACTGCTTCAGTGGATTCCCGAACCGATGCCGTG
ATTCAGAAGATCATCCGGGAAGAGTTCTCAGCCTGCACCATCATCAGCATCGCGCACAGGATACCGACGGTCATGGACTG
CGACAGAGTCCTGGTCATCGATGCCGGCCTAGCGAAGGAATTTGACAGTCCTGCAAACCTGATCGAAAGGCCATCACTGT
TTGGAGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis