Browse Element(s) Details


OsAffx.8868.1.S1_at

Description tigr:9629.m02456
TID=OsAffx.8868.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2534011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25320Os.33510.1.S2_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.1.S1_x_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.2.S1_s_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320OsAffx.11200.1.S1_at10/111+14274596..14285672TolA protein, expressed
LOC_Os01g25330Os.5428.2.S1_x_at11/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25330Os.5428.1.S1_at10/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25340OsAffx.8868.1.S1_at11/111+14300740..14302048hypothetical protein
LOC_Os01g25360Os.6157.1.S1_at1/111+14308667..14309528hydrolase, alpha/beta fold family protein
LOC_Os01g25370OsAffx.23390.1.S1_x_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25370OsAffx.23390.1.S1_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25370Os.4146.1.S1_at11/111+14311104..14315687SUMO protease, putative, expressed
LOC_Os01g25386Os.27603.1.S1_at11/111+14322615..14339725glutathione-conjugate transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8868.1.S1_at--685--7611Chr01:14301411..14301435 (25 bp)
GGGAAAGATTCTACTCGGCTTCGAA
LOC_Os01g25340
OsAffx.8868.1.S1_at--315--10871Chr01:14301251..14301275 (25 bp)
TTGGAAGCTCAGACCCCACAGAGAA
LOC_Os01g25340
OsAffx.8868.1.S1_at--518--2271Chr01:14301052..14301076 (25 bp)
AAATCCACTTGATCCCTGGGCAGTG
LOC_Os01g25340
OsAffx.8868.1.S1_at--429--871Chr01:14301027..14301051 (25 bp)
ATGGCGTCACTGTATATCCCTAGGG
LOC_Os01g25340
OsAffx.8868.1.S1_at--1074--10831Chr01:14300991..14301015 (25 bp)
TTGGATCCGGTTGCAATTCTCAATA
LOC_Os01g25340
OsAffx.8868.1.S1_at--160--4831Chr01:14300943..14300967 (25 bp)
GCTCACAATTACTCTGGCCTGATTA
LOC_Os01g25340
OsAffx.8868.1.S1_at--1157--10051Chr01:14300911..14300935 (25 bp)
TAGTCCTAGTGCAGCTTCGCAGATA
LOC_Os01g25340
OsAffx.8868.1.S1_at--990--10151Chr01:14300875..14300899 (25 bp)
TATCATGTTTGGAACCGCTACGCCT
LOC_Os01g25340
OsAffx.8868.1.S1_at--475--4851Chr01:14300859..14300883 (25 bp)
GCTACGCCTCTAGGGCAATTCAAGG
LOC_Os01g25340
OsAffx.8868.1.S1_at--691--7891Chr01:14300836..14300860 (25 bp)
GGTTCTTGCGTGGAGATCTCACATA
LOC_Os01g25340
OsAffx.8868.1.S1_at--766--5591Chr01:14300779..14300803 (25 bp)
GATAAAGAGGCCACCAACACGTATG
LOC_Os01g25340
Target Sequence 
GGGAAAGATTCTACTCGGCTTCGAAGAGTTGCTTCGCATATGGAAGTAAGATCATAATCACAAGCCGATCTGACAAGATT
GCGAGCTTCGGAACCACGCAGCCACATAAAGTGCGTGCATTTGGAAGCTCAGACCCCACAGAGAACCCCAAGCTGGCATC
ATTGGTGATGGACATGGCCAGCGAGNNNAANNNAAGTATTTATAACAGCACAAATCCACTTGATCCCTGGGCAGTGATGG
CGTCACTGTATATCCCTAGGGCAAATAAAAATTTGGATCCGGTTGCAATTCTCAATAACTATCAGAGAAACTGTAACGAG
GCTCACAATTACTCTGGCCTGATTACGGCCTCTAGTCCTAGTGCAGCTTCGCAGATAACGGTGCAAGATATCATGTTTGG
AACCGCTACGCCTCTAGGGCAATTCAAGGTTCTTGCGTGGAGATCTCACATACCACCATACTACAGTTGTGTATTTGACT
GTGAGATAAAGAGGCCACCAACACGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis