Browse Element(s) Details


OsAffx.11200.1.S1_at

Description tigr:9629.m02453
TID=OsAffx.11200.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to auxilin-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2532010/11TolA protein, expressed
LOC_Os05g251942/11metal transporter family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25280Os.46023.1.S1_at10/111+14263227..14264668Salt stress-induced protein, putative, expressed
LOC_Os01g25290OsAffx.2083.1.S1_at6/111+14268430..14269491hypothetical protein
LOC_Os01g25300Os.52041.1.S1_at11/111+14272854..14274147expressed protein
LOC_Os01g25300Os.55341.1.S1_x_at11/111+14272854..14274147expressed protein
LOC_Os01g25320Os.33510.1.S2_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.1.S1_x_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.2.S1_s_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320OsAffx.11200.1.S1_at10/111+14274596..14285672TolA protein, expressed
LOC_Os01g25330Os.5428.2.S1_x_at11/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25330Os.5428.1.S1_at10/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25340OsAffx.8868.1.S1_at11/111+14300740..14302048hypothetical protein
LOC_Os01g25360Os.6157.1.S1_at1/111+14308667..14309528hydrolase, alpha/beta fold family protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0030001biological_processmetal ion transport
GO:0016020cellular_componentmembrane
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11200.1.S1_at--855--4151Chr01:14278213..14278237 (25 bp)
CGCCGCAGTAGCACGAGCACAAGAA
LOC_Os01g25320
OsAffx.11200.1.S1_at--155--5131Chr01:14278197..14278221 (25 bp)
GCACAAGAAACCCTAACACTGGATG
LOC_Os01g25320
OsAffx.11200.1.S1_at--172--3271Chr01:14278109..14278133 (25 bp)
CAACTGCCGGAGAAGAGAGCGTGCC
LOC_Os01g25320
OsAffx.11200.1.S1_at--709--71Chr01:14278011..14278035 (25 bp)
ATTGCTCCGCTGCATCAAGAGGGTT
LOC_Os01g25320
OsAffx.11200.1.S1_at--832--9031Chr01:14278001..14278025 (25 bp)
TGCATCAAGAGGGTTTTTTCCTCGC
LOC_Os01g25320
OsAffx.11200.1.S1_at--453--1454Chr09:9690312..9690336 (25 bp)
AGAAGCTGAATATTTCCCGGCCGAT
NONE
OsAffx.11200.1.S1_at--797--4474Chr09:9690356..9690380 (25 bp)
GGTGGGCCGGGATAAAATCTCGCCT
NONE
OsAffx.11200.1.S1_at--595--9812Chr05:14521652..14521676 (25 bp)
TAAAATCTCGCCTGGGCTTAACCGA
LOC_Os05g25194
OsAffx.11200.1.S1_at--1055--7552Chr04:24900079..24900223 (25 bp)
GGGCTTAACCGAACGCCTATATTTG
NONE
OsAffx.11200.1.S1_at--391--3691Chr01:14277883..14277909 (25 bp)
CTATATTTGCGTGGACCGGTTCTTT
LOC_Os01g25320
OsAffx.11200.1.S1_at--1135--4551NONE
GCGTGGACCGGTTCTTTGGCCTGAA
NONE
Target Sequence 
CGCCGCAGTAGCACGAGCACAAGAAACCCTAACACTGGATGAGGAGGCTAGGGGAGATGGGAAGGGAAGGAACTCACCGG
GGAGAAGGTGGCCACCGGAGGAGACAACTGCCGGAGAAGAGAGCGTGCCGTCGCCGTCGCTGTCGCGTCGGAGCCGCGCC
GCGCCGCGCCGTGCAGCTGTCCCTGCCGCAGCGCCCCCTCTCATTGCTCCGCTGCATCAAGAGGGTTTTTTCCTCGCCAC
CAGAGAAGCTGAATATTTCCCGGCCGATGACGAGGGGAAAACACCGGGGTGGGCCGGGATAAAATCTCGCCTGGGCTTAA
CCGAACGCCTATATTTGCGTGGACCGGTTCTTTGGCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis