Browse Element(s) Details


Os.46023.1.S1_at

Description gb:CA756459
DB_XREF= gi:25800498
DB_XREF=BR030043000_PLATE_A03_17_019.ab1
CLONE=BR030043000_PLATE_A03_17_019.ab1
TID=Os.46023.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46023 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Mannose-Binding Rice Lectin (P0458A05.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2528010/11Salt stress-induced protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25240OsAffx.8871.1.S1_at10/111+14235410..14239865expressed protein
LOC_Os01g25250OsAffx.23389.1.S1_at3/111+14241816..14243387hypothetical protein
LOC_Os01g25260NANA1+14244589..14244816hypothetical protein
LOC_Os01g25270Os.40577.1.S1_at2/111+14246895..14249528PPR986-12, putative
LOC_Os01g25280Os.46023.1.S1_at10/111+14263227..14264668Salt stress-induced protein, putative, expressed
LOC_Os01g25290OsAffx.2083.1.S1_at6/111+14268430..14269491hypothetical protein
LOC_Os01g25300Os.52041.1.S1_at11/111+14272854..14274147expressed protein
LOC_Os01g25300Os.55341.1.S1_x_at11/111+14272854..14274147expressed protein
LOC_Os01g25320Os.33510.1.S2_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.1.S1_x_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.2.S1_s_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320OsAffx.11200.1.S1_at10/111+14274596..14285672TolA protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46023.1.S1_at--703--1631Chr01:14263528..14263552 (25 bp)
AGCGTGACTATTCGCAGTGGACAAG
LOC_Os01g25280
Os.46023.1.S1_at--1014--2671Chr01:14263550..14263574 (25 bp)
AAGCGATTGATGCTATCACCTTCTC
LOC_Os01g25280
Os.46023.1.S1_at--25--9671Chr01:14263565..14263589 (25 bp)
TCACCTTCTCCTACGTGGGAATGGA
LOC_Os01g25280
Os.46023.1.S1_at--1025--8171NONE
GGAAGCCCTACTACGTTCAAGATTG
NONE
Os.46023.1.S1_at--1135--2811Chr01:14264281..14264305 (25 bp)
AAGATTGGCCCTACAGAGCGTGTGA
LOC_Os01g25280
Os.46023.1.S1_at--1105--5291Chr01:14264304..14264328 (25 bp)
GAAGGAATTCTCTGGAACCCATGGC
LOC_Os01g25280
Os.46023.1.S1_at--35--8191Chr01:14264335..14264359 (25 bp)
GGAACCTTGGCCGACATTGTGACAT
LOC_Os01g25280
Os.46023.1.S1_at--662--6391Chr01:14264367..14264391 (25 bp)
GATCGTCACCGATGCTACAACGTAT
LOC_Os01g25280
Os.46023.1.S1_at--18--10511Chr01:14264419..14264443 (25 bp)
TTCAATGTTCCGCTGCAGGGCAACG
LOC_Os01g25280
Os.46023.1.S1_at--590--8071Chr01:14264473..14264497 (25 bp)
GGAGCACTCCTTGATGCAGTTGGCG
LOC_Os01g25280
Os.46023.1.S1_at--683--4851Chr01:14264528..14264552 (25 bp)
GCTACGCCTACTTATATACTTTCTC
LOC_Os01g25280
Target Sequence 
AGCGTGACTATTCGCAGTGGACAAGCGATTGATGCTATCACCTTCTCCTACGTGGGAATGGATGGACTGGAGCATGTGGT
TGGTCCATGGGGTGGTCCTGGCGGAAGCCCTACTACGTTCAAGATTGGCCCTACAGAGCGTGTGAAGGAATTCTCTGGAA
CCCATGGCCCGTTTGGAACCTTGGCCGACATTGTGACATACCTGAAGATCGTCACCGATGCTACAACGTATGAGCTGGGT
GTGAAGAGTGGAACACCCTTCAATGTTCCGCTGCAGGGCAACGCCACTGTTGTTGGTTTCTTTGGACGCTCTGGAGCACT
CCTTGATGCAGTTGGCGTCTACATCCGCCCATGATGATCCTGGGCACGCTACGCCTACTTATATACTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis