Browse Element(s) Details


OsAffx.8871.1.S1_at

Description tigr:9629.m02446
TID=OsAffx.8871.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2524010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25189OsAffx.21107.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.26848.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189OsAffx.13227.1.S1_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.55138.1.S1_x_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25210NANA1+14227658..14228593retrotransposon, putative, centromere-specific
LOC_Os01g25220OsAffx.11199.1.S1_x_at11/111+14230490..14230776hypothetical protein
LOC_Os01g25230OsAffx.2080.1.S1_at11/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.2.A1_at6/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.5.S1_x_at3/111+14232696..14234440hypothetical protein
LOC_Os01g25240OsAffx.8871.1.S1_at10/111+14235410..14239865expressed protein
LOC_Os01g25250OsAffx.23389.1.S1_at3/111+14241816..14243387hypothetical protein
LOC_Os01g25260NANA1+14244589..14244816hypothetical protein
LOC_Os01g25270Os.40577.1.S1_at2/111+14246895..14249528PPR986-12, putative
LOC_Os01g25280Os.46023.1.S1_at10/111+14263227..14264668Salt stress-induced protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8871.1.S1_at--434--5811Chr01:14237788..14237812 (25 bp)
GAGACCCGGCCATTAATTTAGTTGA
LOC_Os01g25240
OsAffx.8871.1.S1_at--1082--911Chr01:14237978..14238002 (25 bp)
AGGCAGTGCTTACCCATGGAGTTTC
LOC_Os01g25240
OsAffx.8871.1.S1_at--512--3191Chr01:14238029..14238053 (25 bp)
CAAGGCTTTGCTTCTATTGAACCGT
LOC_Os01g25240
OsAffx.8871.1.S1_at--707--31Chr01:14238044..14238068 (25 bp)
ATTGAACCGTTTCAGCTTCCTTTGT
LOC_Os01g25240
OsAffx.8871.1.S1_at--1021--471NONE
ATCTGCACAGCCAGGTGTCTGATTA
NONE
OsAffx.8871.1.S1_at--236--1131Chr01:14238781..14238805 (25 bp)
AGTGCATCTGTAGCTTTGTCAAATC
LOC_Os01g25240
OsAffx.8871.1.S1_at--309--391Chr01:14238803..14238827 (25 bp)
ATCAGTGTTCCACACCTTGTTGCAT
LOC_Os01g25240
OsAffx.8871.1.S1_at--150--131Chr01:14238997..14239021 (25 bp)
ATTCATTTGATCACTCCTGTTTCTC
LOC_Os01g25240
OsAffx.8871.1.S1_at--1074--4231Chr01:14239012..14239036 (25 bp)
CCTGTTTCTCGTCAGCTTTTGGAAA
LOC_Os01g25240
OsAffx.8871.1.S1_at--264--4511Chr01:14239039..14239063 (25 bp)
GCCGATATCTTTTTCTGCAGTAGTT
LOC_Os01g25240
OsAffx.8871.1.S1_at--46--6811Chr01:14239061..14239085 (25 bp)
GTTTTACAGTCCCTACATGTCTGCT
LOC_Os01g25240
Target Sequence 
GAGACCCGGCCATTAATTTAGTTGAAATTCGTGCTGCACAACACTCTCCTCGTCNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTATTAATAAAGAAAGAGGCAAGGATCATTCGTGATCTAAGGATAATTGCATACTTCAGGCAGTGCTTACCCAT
GGAGTTTCCTGTTTTCTCTTACAATGATTTAATTCAAGGCTTTGCTTCTATTGAACCGTTTCAGCTTCCTTTGTCAAAAC
TTCAGGTTATTGATCTGCACAGCCAGGTGTCTGATTATACAGTGCATCACTTCTTGAAAGGTACTATTGTTGGCATTGCA
ACAAGTGCATCTGTAGCTTTGTCAAATCAGTGTTCCACACCTTGTTGCATTGGACTAGGTTTCATCAAAGCCATAGATGT
TTCACGAGATTGTATTCATTTGATCACTCCTGTTTCTCGTCAGCTTTTGGAAAATGCCGATATCTTTTTCTGCAGTAGTT
TTACAGTCCCTACATGTCTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8871.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis