Browse Element(s) Details


OsAffx.2080.1.S1_at

Description tigr:9629.m02445
TID=OsAffx.2080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2523011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25189OsAffx.21107.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.26848.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189OsAffx.13227.1.S1_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.55138.1.S1_x_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25210NANA1+14227658..14228593retrotransposon, putative, centromere-specific
LOC_Os01g25220OsAffx.11199.1.S1_x_at11/111+14230490..14230776hypothetical protein
LOC_Os01g25230OsAffx.2080.1.S1_at11/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.2.A1_at6/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.5.S1_x_at3/111+14232696..14234440hypothetical protein
LOC_Os01g25240OsAffx.8871.1.S1_at10/111+14235410..14239865expressed protein
LOC_Os01g25250OsAffx.23389.1.S1_at3/111+14241816..14243387hypothetical protein
LOC_Os01g25260NANA1+14244589..14244816hypothetical protein
LOC_Os01g25270Os.40577.1.S1_at2/111+14246895..14249528PPR986-12, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2080.1.S1_at--724--4071Chr01:14232739..14232763 (25 bp)
CGAGCATGAGCTCGCTGCTGGACGG
LOC_Os01g25230
OsAffx.2080.1.S1_at--855--4951Chr01:14234217..14234241 (25 bp)
GCATATCACTAACAGAGGCCAGGGA
LOC_Os01g25230
OsAffx.2080.1.S1_at--486--231Chr01:14234219..14234243 (25 bp)
ATATCACTAACAGAGGCCAGGGACA
LOC_Os01g25230
OsAffx.2080.1.S1_at--89--371Chr01:14234221..14234245 (25 bp)
ATCACTAACAGAGGCCAGGGACATC
LOC_Os01g25230
OsAffx.2080.1.S1_at--324--3211Chr01:14234311..14234335 (25 bp)
CAAGGGTGCCATTTTCGGCGCGGAT
LOC_Os01g25230
OsAffx.2080.1.S1_at--974--1051Chr01:14234313..14234337 (25 bp)
AGGGTGCCATTTTCGGCGCGGATCC
LOC_Os01g25230
OsAffx.2080.1.S1_at--390--10311Chr01:14234323..14234347 (25 bp)
TTTCGGCGCGGATCCCTCTCAGCTT
LOC_Os01g25230
OsAffx.2080.1.S1_at--1099--9531Chr01:14234362..14234386 (25 bp)
TCTTTCCCTTCACAAGCGAGCACTG
LOC_Os01g25230
OsAffx.2080.1.S1_at--38--10291Chr01:14234364..14234388 (25 bp)
TTTCCCTTCACAAGCGAGCACTGGC
LOC_Os01g25230
OsAffx.2080.1.S1_at--223--10511Chr01:14234370..14234394 (25 bp)
TTCACAAGCGAGCACTGGCGCATGT
LOC_Os01g25230
OsAffx.2080.1.S1_at--587--9691Chr01:14234371..14234395 (25 bp)
TCACAAGCGAGCACTGGCGCATGTC
LOC_Os01g25230
Target Sequence 
CGAGCATGAGCTCGCTGCTGGACGGGGCCATCCCGGCGCCTGCGTCGGGCATATCACTAACAGAGGCCAGGGACATCGGC
GGGGCTGGCGGCGAGGCCATCATCATCGACGGCGGTGGGGGCCTTGGCAGCCTGGGGAGGGGCAAGGGTGCCATTTTCGG
CGCGGATCCCTCTCAGCTTCCCACCGCTACCGCTCTTTCCCTTCACAAGCGAGCACTGGCGCATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis