Browse Element(s) Details


OsAffx.11199.1.S1_x_at

Description tigr:9629.m02444
TID=OsAffx.11199.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2522011/11hypothetical protein
LOC_Os03g310441/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25189OsAffx.21107.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.26848.1.S1_at11/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189OsAffx.13227.1.S1_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25189Os.55138.1.S1_x_at1/111+14207395..14216126Ergosterol biosynthesis ERG4/ERG24 family protein, expressed
LOC_Os01g25210NANA1+14227658..14228593retrotransposon, putative, centromere-specific
LOC_Os01g25220OsAffx.11199.1.S1_x_at11/111+14230490..14230776hypothetical protein
LOC_Os01g25230OsAffx.2080.1.S1_at11/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.2.A1_at6/111+14232696..14234440hypothetical protein
LOC_Os01g25230Os.41248.5.S1_x_at3/111+14232696..14234440hypothetical protein
LOC_Os01g25240OsAffx.8871.1.S1_at10/111+14235410..14239865expressed protein
LOC_Os01g25250OsAffx.23389.1.S1_at3/111+14241816..14243387hypothetical protein
LOC_Os01g25260NANA1+14244589..14244816hypothetical protein
LOC_Os01g25270Os.40577.1.S1_at2/111+14246895..14249528PPR986-12, putative

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11199.1.S1_x_at--939--2731Chr01:14230523..14230547 (25 bp)
AAGAAGGCAACTACAGTAGCAAGAT
LOC_Os01g25220
OsAffx.11199.1.S1_x_at--684--1351Chr01:14230524..14230548 (25 bp)
AGAAGGCAACTACAGTAGCAAGATC
LOC_Os01g25220
OsAffx.11199.1.S1_x_at--1020--931Chr01:14230527..14230551 (25 bp)
AGGCAACTACAGTAGCAAGATCAAC
LOC_Os01g25220
OsAffx.11199.1.S1_x_at--1076--5131Chr01:14230529..14230553 (25 bp)
GCAACTACAGTAGCAAGATCAACGT
LOC_Os01g25220
OsAffx.11199.1.S1_x_at--798--3231Chr01:14230530..14230554 (25 bp)
CAACTACAGTAGCAAGATCAACGTT
LOC_Os01g25220
OsAffx.11199.1.S1_x_at--578--5171Chr01:14230541..14230565 (25 bp)
GCAAGATCAACGTTGTCATCGCTGA
LOC_Os01g25220
OsAffx.11199.1.S1_x_at--534--2791Chr01:14230543..14230567 (25 bp)
AAGATCAACGTTGTCATCGCTGAGG
LOC_Os01g25220
OsAffx.11199.1.S1_x_at--434--1271Chr01:14230544..14230568 (25 bp)
AGATCAACGTTGTCATCGCTGAGGA
LOC_Os01g25220
OsAffx.11199.1.S1_x_at--957--371Chr01:14230546..14230570 (25 bp)
ATCAACGTTGTCATCGCTGAGGAGG
LOC_Os01g25220
OsAffx.11199.1.S1_x_at--1072--3251Chr01:14230548..14230572 (25 bp)
CAACGTTGTCATCGCTGAGGAGGAA
LOC_Os01g25220
OsAffx.11199.1.S1_x_at--1003--4032Chr01:14230551..14230575 (25 bp)
CGTTGTCATCGCTGAGGAGGAAGAA
LOC_Os01g25220
Target Sequence 
AAGAAGGCAACTACAGTAGCAAGATCAACGTTGTCATCGCTGAGGAGGAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11199.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis