Browse Element(s) Details


Os.6157.1.S1_at

Description gb:AU166506
DB_XREF= gi:12404905
DB_XREF=AU166506
CLONE=C12978
TID=Os.6157.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.6157 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1014_G12.25 (OJ1014_G12.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3763011/11hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g253601/11hydrolase, alpha/beta fold family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37590Os.45923.1.S1_at11/111+21365653..21367927Major Facilitator Superfamily protein, expressed
LOC_Os01g37600OsAffx.21227.2.S1_at11/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37600OsAffx.21227.1.S1_x_at10/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37610OsAffx.8980.1.S1_at11/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37610Os.27639.1.S1_x_at10/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37630Os.6157.1.S1_at11/111+21383602..21384871hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37650Os.5258.1.A1_at11/111+21389176..21390528hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37660OsAffx.11364.1.S1_at5/111+21392308..21392757hypothetical protein
LOC_Os01g37670Os.31606.1.S1_at11/111+21395354..21397056F-box domain containing protein, expressed
LOC_Os01g37690Os.19755.2.S1_a_at11/111+21398344..21403577Vacuolar cation/proton exchanger 1a, putative, expressed
LOC_Os01g37700OsAffx.32106.1.S1_at11/111+21404854..21406169hypothetical protein
LOC_Os01g37700OsAffx.32106.2.S1_x_at5/111+21404854..21406169hypothetical protein
LOC_Os01g37710NANA1+21409660..21413408hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6157.1.S1_at--52--8611Chr01:21384134..21384158 (25 bp)
TGGTGCGGGTGAGCTCCTACTACGT
LOC_Os01g37630
Os.6157.1.S1_at--617--5891Chr01:21384124..21384148 (25 bp)
GAGCTCCTACTACGTGGACGACATG
LOC_Os01g37630
Os.6157.1.S1_at--516--3732Chr01:14309288..14309309 (22 bp)
CTACTACGTGGACGACATGCGCCGC
LOC_Os01g25360
Os.6157.1.S1_at--842--711Chr01:21383997..21384021 (25 bp)
ATGATCGCCGGCTGCCCCGTAGAGG
LOC_Os01g37630
Os.6157.1.S1_at--355--9331Chr01:21383894..21383918 (25 bp)
TCGCCAACACCTACACTTGATTTTG
LOC_Os01g37630
Os.6157.1.S1_at--146--3631Chr01:21383879..21383903 (25 bp)
CTTGATTTTGATTGTACTAGCTGAC
LOC_Os01g37630
Os.6157.1.S1_at--95--51Chr01:21383869..21383893 (25 bp)
ATTGTACTAGCTGACAACACGTCGC
LOC_Os01g37630
Os.6157.1.S1_at--838--2191Chr01:21383856..21383880 (25 bp)
ACAACACGTCGCCAGCATAACATAC
LOC_Os01g37630
Os.6157.1.S1_at--725--4951Chr01:21383842..21383866 (25 bp)
GCATAACATACCAAGGCCGTGTTTA
LOC_Os01g37630
Os.6157.1.S1_at--1068--8391Chr01:21383828..21383852 (25 bp)
GGCCGTGTTTAGTTAGATACCCAAT
LOC_Os01g37630
Os.6157.1.S1_at--1053--331Chr01:21383739..21383763 (25 bp)
ATAAATTCCGTCTATCAACTGTGAG
LOC_Os01g37630
Target Sequence 
TGGTGCGGGTGAGCTCCTACTACGTGGACGACATGCGCCGCCAGCCGCCGTTCGGCGAGGACCGGTACGGCGCGGTGCGC
AAGGTGTACGTGGTCTGCGGGAAGGACCAGGCCATCGTGGAGGCCTACCAGCGGCGGATGATCGCCGGCTGCCCCGTAGA
GGAGGTGAGGGAGATCGCCGGCGCCGACCACATGGCCATGTTCTCCGCGCCGGTGGAGCTCGCCGGGCACCTCGCCGACG
TCGCCAACACCTACACTTGATTTTGATTGTACTAGCTGACAACACGTCGCCAGCATAACATACCAAGGCCGTGTTTAGTT
AGATACCCAATTTTTTTTTGACGTATACGGACACNCATTTTAAGTATTAAACATAGACTAATAACAAAACAAATTATAAA
TTCCGTCTATCAACTGTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6157.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis