Browse Element(s) Details


Os.19755.2.S1_a_at

Description gb:AF489111.1
DB_XREF= gi:19909125
TID=Os.19755.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19755 (NCBI UniGene Cluster)
DEF=Oryza sativa putative Ca2+H+ exchanger mRNA, complete cds.
PROD=putative Ca2+H+ exchanger
FL= gb:AF489111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3769011/11Vacuolar cation/proton exchanger 1a, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37600OsAffx.21227.2.S1_at11/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37600OsAffx.21227.1.S1_x_at10/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37610OsAffx.8980.1.S1_at11/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37610Os.27639.1.S1_x_at10/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37630Os.6157.1.S1_at11/111+21383602..21384871hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37650Os.5258.1.A1_at11/111+21389176..21390528hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37660OsAffx.11364.1.S1_at5/111+21392308..21392757hypothetical protein
LOC_Os01g37670Os.31606.1.S1_at11/111+21395354..21397056F-box domain containing protein, expressed
LOC_Os01g37690Os.19755.2.S1_a_at11/111+21398344..21403577Vacuolar cation/proton exchanger 1a, putative, expressed
LOC_Os01g37700OsAffx.32106.1.S1_at11/111+21404854..21406169hypothetical protein
LOC_Os01g37700OsAffx.32106.2.S1_x_at5/111+21404854..21406169hypothetical protein
LOC_Os01g37710NANA1+21409660..21413408hypothetical protein
LOC_Os01g37720Os.40855.2.S1_x_at8/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_x_at3/111+21421725..21422612hypothetical protein
LOC_Os01g37720Os.40855.4.S1_at1/111+21421725..21422612hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006793biological_processphosphorus metabolism
GO:0006812biological_processcation transport
GO:0006816biological_processcalcium ion transport
GO:0006874biological_processcalcium ion homeostasis
GO:0006882biological_processzinc ion homeostasis
GO:0030026biological_processmanganese ion homeostasis
GO:0051592biological_processresponse to calcium ion
GO:0005774cellular_componentvacuolar membrane
GO:0009705cellular_componentvacuolar membrane (sensu Magnoliophyta)
GO:0015368molecular_functioncalcium:cation antiporter activity
GO:0015369molecular_functioncalcium:hydrogen antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19755.2.S1_a_at--408--5491Chr01:21399942..21400080 (25 bp)
GAACAAGCTGGACATCACTCTTGGG
LOC_Os01g37690
Os.19755.2.S1_a_at--388--7691Chr01:21399919..21399943 (25 bp)
GGGTAGCTCTGGGATCGGCCACCCA
LOC_Os01g37690
Os.19755.2.S1_a_at--189--8451Chr01:21399903..21399927 (25 bp)
GGCCACCCAGATATCCATGTTCGTG
LOC_Os01g37690
Os.19755.2.S1_a_at--579--4331Chr01:21399795..21399913 (25 bp)
CCATGTTCGTGGTGCCACTGAGTGT
LOC_Os01g37690
Os.19755.2.S1_a_at--676--8891Chr01:21399777..21399801 (25 bp)
TGAGTGTGCTCGTGGCCTGGATCAT
LOC_Os01g37690
Os.19755.2.S1_a_at--17--7691Chr01:21399750..21399774 (25 bp)
GGGTCCAAATGGATCTTGACTTCAA
LOC_Os01g37690
Os.19755.2.S1_a_at--632--2691Chr01:21399727..21399751 (25 bp)
AAGCTGCTAGAGACCGGCTCTCTGT
LOC_Os01g37690
Os.19755.2.S1_a_at--170--1391Chr01:21399717..21399741 (25 bp)
AGACCGGCTCTCTGTTCATGGCGGT
LOC_Os01g37690
Os.19755.2.S1_a_at--321--8431Chr01:21399542..21399707 (25 bp)
GGCCTTCACCCTGCAGGATGGAACA
LOC_Os01g37690
Os.19755.2.S1_a_at--140--8011Chr01:21399527..21399551 (25 bp)
GGATGGAACATCACATTACCTGAAG
LOC_Os01g37690
Os.19755.2.S1_a_at--592--8691Chr01:21399486..21399510 (25 bp)
TGTGCTACATTGTCATCGGCGCATG
LOC_Os01g37690
Target Sequence 
GAACAAGCTGGACATCACTCTTGGGGTAGCTCTGGGATCGGCCACCCAGATATCCATGTTCGTGGTGCCACTGAGTGTGC
TCGTGGCCTGGATCATGGGGGTCCAAATGGATCTTGACTTCAAGCTGCTAGAGACCGGCTCTCTGTTCATGGCGGTGCTG
GTGACGGCCTTCACCCTGCAGGATGGAACATCACATTACCTGAAGGGGATTCTCCTCCTCCTGTGCTACATTGTCATCGG
CGCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19755.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis