Browse Element(s) Details


Os.45923.1.S1_at

Description gb:BM038703
DB_XREF= gi:16754324
DB_XREF=V007F10
CLONE=V007F10
TID=Os.45923.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45923 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1014_G12.22 (OJ1014_G12.22), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3759011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37580OsAffx.11362.2.S1_x_at11/111+21337410..21349541hypothetical protein
LOC_Os01g37580OsAffx.11362.1.S1_at10/111+21337410..21349541hypothetical protein
LOC_Os01g37580OsAffx.16381.1.S1_x_at1/111+21337410..21349541hypothetical protein
LOC_Os01g37590Os.45923.1.S1_at11/111+21365653..21367927Major Facilitator Superfamily protein, expressed
LOC_Os01g37600OsAffx.21227.2.S1_at11/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37600OsAffx.21227.1.S1_x_at10/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37610OsAffx.8980.1.S1_at11/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37610Os.27639.1.S1_x_at10/111+21375625..21380557transposon protein, putative, unclassified, expressed
LOC_Os01g37630Os.6157.1.S1_at11/111+21383602..21384871hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37650Os.5258.1.A1_at11/111+21389176..21390528hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g37660OsAffx.11364.1.S1_at5/111+21392308..21392757hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015706biological_processnitrate transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015112molecular_functionnitrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45923.1.S1_at--209--10571Chr01:21367438..21367462 (25 bp)
TTCTTCTTCAGCAGCGTGCTCGTGT
LOC_Os01g37590
Os.45923.1.S1_at--509--5811Chr01:21367648..21367672 (25 bp)
GACGCCGACGAGAAATGCTAGCTAT
LOC_Os01g37590
Os.45923.1.S1_at--921--4871Chr01:21367668..21367692 (25 bp)
GCTATAGAACTCATCACACACACAC
LOC_Os01g37590
Os.45923.1.S1_at--492--2191Chr01:21367707..21367731 (25 bp)
ACACACTCCTATAATGTATAAGGTT
LOC_Os01g37590
Os.45923.1.S1_at--1120--6931Chr01:21367739..21367763 (25 bp)
GTAGTCATTGGCTATATATCGTTAG
LOC_Os01g37590
Os.45923.1.S1_at--904--6551Chr01:21367798..21367823 (25 bp)
GATTCAGTGCGCGTCAGCCCTGATG
LOC_Os01g37590
Os.45923.1.S1_at--1020--4631Chr01:21367808..21367833 (25 bp)
GCGTCAGCCCTGATGTAAGAACCAA
LOC_Os01g37590
Os.45923.1.S1_at--974--1651Chr01:21367814..21367838 (25 bp)
AGCCCTGATGTAAGAACCAAGGTCA
LOC_Os01g37590
Os.45923.1.S1_at--657--3211Chr01:21367831..21367855 (25 bp)
CAAGGTCAGTTCAGTGTTCACTCCA
LOC_Os01g37590
Os.45923.1.S1_at--373--10531Chr01:21367840..21367864 (25 bp)
TTCAGTGTTCACTCCAGGTTATCAT
LOC_Os01g37590
Os.45923.1.S1_at--632--8791Chr01:21367845..21367869 (25 bp)
TGTTCACTCCAGGTTATCATACTGC
LOC_Os01g37590
Target Sequence 
TTCTTCTTCAGCAGCGTGCTCGTGTCGCTCGTCAAGGGCGCCACCACCTGGCTCGGCGACACCATCGACCGCAGCCGCCT
CGACTACTTCTACTGGCTCCTCGCCGTCCTCAGCGTCCTCAACCTCGCCGCCTACCTCGTCTGCGCCAAGTGGGCCGCCA
CCGCCGCCGCCACCTCGCNGGAGCAGCAGCAGCAGCACACCNCCGTCGCCGACGCCGACGAGAAATGCTAGCTATAGAAC
TCATCACACACACACNAGAGTTAATTAATTACACACTCCTATAATGTATAAGGTTTGCACCNGTAGTCATTGGCTATATA
TCGTTAGTTAATTAATTAGTACTACTCCANGAGGCTTTTCTAGATTCAGTGCGCGTCAGCCCTGATGTAAGAACCAAGGT
CAGTTCAGTGTTCACTCCAGGTTATCATACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis