Browse Element(s) Details


OsAffx.11362.2.S1_x_at

Description tigr:9629.m03559
TID=OsAffx.11362.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3758011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37560Os.10017.1.S1_at10/111+21314607..21319239DnaJ domain containing protein, expressed
LOC_Os01g37570Os.24831.3.S1_x_at10/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37570Os.24831.3.S1_s_at7/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37570Os.24831.1.S1_x_at6/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37570Os.23706.1.A1_x_at1/111+21330455..21332810retrotransposon protein, putative, unclassified
LOC_Os01g37580OsAffx.11362.2.S1_x_at11/111+21337410..21349541hypothetical protein
LOC_Os01g37580OsAffx.11362.1.S1_at10/111+21337410..21349541hypothetical protein
LOC_Os01g37580OsAffx.16381.1.S1_x_at1/111+21337410..21349541hypothetical protein
LOC_Os01g37590Os.45923.1.S1_at11/111+21365653..21367927Major Facilitator Superfamily protein, expressed
LOC_Os01g37600OsAffx.21227.2.S1_at11/111+21368717..21374088Agenet domain containing protein, expressed
LOC_Os01g37600OsAffx.21227.1.S1_x_at10/111+21368717..21374088Agenet domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11362.2.S1_x_at--614--8171Chr01:21348639..21348663 (25 bp)
GGAACCCGACAGCAACAGGCAGATT
LOC_Os01g37580
OsAffx.11362.2.S1_x_at--1088--4231Chr01:21348670..21348694 (25 bp)
CCGGTAACACAACCATCATCTTATG
LOC_Os01g37580
OsAffx.11362.2.S1_x_at--886--5811Chr01:21348704..21348728 (25 bp)
GACCCCTAGCAGCAGCAAAGTTTTC
LOC_Os01g37580
OsAffx.11362.2.S1_x_at--1039--8731Chr01:21348786..21348810 (25 bp)
TGTCAAGGTACTTGGAGCTGGCAAT
LOC_Os01g37580
OsAffx.11362.2.S1_x_at--1084--8211Chr01:21348805..21348829 (25 bp)
GGCAATCCAAGCACCACACAAATAT
LOC_Os01g37580
OsAffx.11362.2.S1_x_at--1134--231Chr01:21348826..21349158 (25 bp)
ATATCTGCAATGGTAGGAGAGCACC
LOC_Os01g37580
OsAffx.11362.2.S1_x_at--685--3271Chr01:21349198..21349222 (25 bp)
CAACAAACTGTGATCTTATCCCCAA
LOC_Os01g37580
OsAffx.11362.2.S1_x_at--1156--2331Chr01:21349400..21349424 (25 bp)
AAAGCAGCGCTTGCCGATCATGAAG
LOC_Os01g37580
OsAffx.11362.2.S1_x_at--789--5351Chr01:21349421..21349445 (25 bp)
GAAGACATTCCAATGGACCCCTGGT
LOC_Os01g37580
OsAffx.11362.2.S1_x_at--1140--5791Chr01:21349436..21349460 (25 bp)
GACCCCTGGTCAGATTGACTCTGAT
LOC_Os01g37580
OsAffx.11362.2.S1_x_at--609--971Chr01:21349475..21349499 (25 bp)
AGGAGGGTCACCGTTAGTGCCACCT
LOC_Os01g37580
Target Sequence 
GGAACCCGACAGCAACAGGCAGATTACAATGCCGGTAACACAACCATCATCTTATGCAAGGAAACGACCCCTAGCAGCAG
CAAAGTTTTCAGACAGAAAAGAAACCTCGCAATTGCTAGTAGATATTATATACCGAGACTCAGTAGTTGTCAAGGTACTT
GGAGCTGGCAATCCAAGCACCACACAAATATCTGCAATGGTAGGAGAGCACCATATCCAAGATCTTTCTGTGTTTAGATT
GGCTGCATGGACAACAAACTGTGATCTTATCCCCAAGATTATAGAATGGAACATTGAGACAAATCAGGAAGGGGAGCAAT
GTACTGATCTCAAGTGGAAACCAAACGGTGATCTATCTATCATACTTATTCACATTGAAAAGTTATTCGACTATAGCAAT
GAAAACAATACAACTGAAGACAATCAAGGAGATCTCACAGAGTATGAGAAGACAAAGCAGCGCTTGCCGATCATGAAGAC
ATTCCAATGGACCCCTGGTCAGATTGACTCTGATTATGGTCCAATCGAAGGAGGGTCACCGTTAGTGCCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11362.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis